Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq15901 152 5e-32 seq15893 152 5e-32 seq15897 143 2e-29 seq3911 143 2e-29 seq15894 141 8e-29 seq18697 127 2e-24 >seq15901 Length=812 Score = 152 bits (168), Expect = 5e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| ||||||||||| || || || Sbjct 45 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 104 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 105 GATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 164 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| ||||||||||| | || |||||| || ||||||| || ||||| Sbjct 165 CTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCAC 224 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 225 AAATATCTGCAT 236 >seq15893 Length=595 Score = 152 bits (168), Expect = 5e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| ||||||||||| || || || Sbjct 394 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 453 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 454 GATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 513 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| ||||||||||| | || |||||| || ||||||| || ||||| Sbjct 514 CTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCAC 573 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 574 AAATATCTGCAT 585 >seq15897 Length=564 Score = 143 bits (158), Expect = 2e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| ||||||||||| || || || Sbjct 197 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 256 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 257 GATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 316 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| ||||||||||| | || |||||| || ||||||| || ||||| Sbjct 317 CTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCAC 376 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 377 GAAGATCTGCAT 388 >seq3911 Length=608 Score = 143 bits (158), Expect = 2e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| ||||||||||| || || || Sbjct 543 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 484 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 483 GATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 424 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| ||||||||||| | || |||||| || ||||||| || ||||| Sbjct 423 CTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCAC 364 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 363 GAAGATCTGCAT 352 >seq15894 Length=465 Score = 141 bits (156), Expect = 8e-29 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || || | |||||||||| || || || Sbjct 254 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCG--GACCAGCTGCTTGCCAGCGAA 311 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 312 GATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 371 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| ||||||||||| | || |||||| || ||||||| || ||||| Sbjct 372 CTCAATGGTGTCGCTGGATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCAC 431 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 432 AAATATCTGCAT 443 >seq18697 Length=8154 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| || | | || ||| | || | ||| |||||| || |||||||| || || Sbjct 7655 TCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 7596 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || || |||| ||||||||||| || || || |||| |||||||| |||| || Sbjct 7595 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGG 7536 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || || |||||||||| |||||| ||||| | | | |||||||| || ||||| Sbjct 7535 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACTTTCTCAATGGTGTCGCTGGACTCCAC 7476 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || |||||| || ||||||| || ||| | || |||||||| Sbjct 7475 TTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCGCGAAGATCTGCAT 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450641350096520