Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20180 141 7e-29 >seq20180 Length=1155 Score = 141 bits (156), Expect = 7e-29 Identities = 256/372 (69%), Gaps = 2/372 (1%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| ||| |||| || | || || || || ||||| || |||||||| || || || Sbjct 305 GAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATTGAGAACGTT 364 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 |||||||||| ||| | ||| | ||||||||||||| |||| | | |||||| | Sbjct 365 CATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAGGAGAAGGAC 424 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || |||| | || || ||| | || ||| || | | || || ||||||| | Sbjct 425 CGCATGTTGCACGCCATTTCGACAATTCCGTGC-ATCCAGAAAAAGGCCAACTGGGCGAT 483 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | ||||| | ||| |||| ||||| ||||| || ||||| | ||||| Sbjct 484 TCGGTGGATCCGCAGCAGCAGTTCGTTTGCCGAACGCCTTGTTGCCTTTGCGGCGGTGGA 543 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| ||||||||||| || || || || | || ||| ||||||| || ||| |||| Sbjct 544 AGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGAT 603 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTT 44274 ||| ||| ||||||| ||||| | || |||||||||||||| || || || Sbjct 604 GCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTT 663 Query 44275 TGCTTGCTTGTT 44286 ||| ||| |||| Sbjct 664 TGCGTGCCTGTT 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397325120099095