Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12610 203 4e-47 seq20180 145 9e-30 >seq12610 Length=6403 Score = 203 bits (224), Expect = 4e-47 Identities = 670/1034 (65%), Gaps = 17/1034 (2%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 4006 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 3947 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | |||||| |||||| || || |||| ||||| ||||| ||||| || Sbjct 3946 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTGCC 3887 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 3886 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 3827 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| | |||| ||| || || || ||||| | || ||| | | | || Sbjct 3826 CTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCATTG---TAGGCAAT 3770 Query 118082 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 || | || ||| || | ||| ||||| ||| |||||||| ||| || | Sbjct 3769 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 3710 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 3709 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 3650 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 3649 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 3591 Query 118258 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 ||| || | || || | || ||| | | || || | ||| | || ||||| | Sbjct 3590 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 3531 Query 118318 CGTAGTTGAGCTTTGTC---TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACG 118374 | | | || | | | || ||||| ||||||||| || ||||| |||| Sbjct 3530 CCCAACGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 3471 Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 | || || |||| | |||| || ||||| || ||||| | ||| |||||||| Sbjct 3470 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 3411 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 | | || ||| || || ||||||||||| |||||| | | | ||||| | | Sbjct 3410 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCTGGC 3351 Query 118495 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 | || | || || || ||||| ||||| | ||||| || || | |||| Sbjct 3350 ATGTGAATGGTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATTCCAA 3291 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 118611 | || |||| | || |||| | ||| ||| || |||||| || | || Sbjct 3290 TGGGACGATTGAGCTCGTTG--CTTCGGCGCGA-CTCGGGTACAGGATAATGGTTACGAT 3234 Query 118612 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 118671 |||| || | ||| |||||||| ||||||| || |||| |||| | | | || || Sbjct 3233 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAACCGCTGGTGAT 3174 Query 118672 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 118731 | || | |||| | || ||| | ||||| || || || || || || |||| Sbjct 3173 CGTAAATTTTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 3114 Query 118732 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAA 118791 | | | |||||| | || ||||||||||| || ||||| | ||| || | ||| | Sbjct 3113 CCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 3054 Query 118792 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 118851 || || | ||||| |||||||| || |||||| || ||||||||||||||| | | Sbjct 3053 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 2994 Query 118852 GCGTCCCCGTCTCC 118865 | ||||| ||| Sbjct 2993 GGACGCCCGTTTCC 2980 >seq20180 Length=1155 Score = 145 bits (160), Expect = 9e-30 Identities = 434/653 (66%), Gaps = 40/653 (6%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| |||||||||||||| || | || ||| | |||||| Sbjct 957 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATA 898 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTG-----AGGA 129842 || || ||||||||||||||||| | || | ||| | || || | Sbjct 897 AAGTCGAATGGGTTCTTTGAGTTGTAG-----TGACGCTCGTTGCCAAGTGCCACCAGCA 843 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 | ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 842 GCCGATCCGCCACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCC 783 Query 129903 T-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 ||| |||| | ||| |||||||| | |||||||||||| || | | || Sbjct 782 GCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAATC 724 Query 129962 GCGTGAATGGTCTCCGT-GCCAGGTCTATTGCGCAA---AGTCTTG----AAGAGTTCCA 130013 || |||| |||||| | || | | || | ||| ||| || || || || Sbjct 723 TCGCGAATACGCTCCGTTGGTAGCT-TGTT-CACAATGTAGTTTTCGTACAACAGG--CA 668 Query 130014 CGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 130073 || |||| ||| ||| | || || ||||| |||||||||||||| ||| ||| | Sbjct 667 CG-CAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCC 609 Query 130074 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 130133 | ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| | Sbjct 608 CGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAA 549 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GGGACTTTGTATCA 130192 | || ||||| ||| || |||| || || || ||||| || | | || | || Sbjct 548 TACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGAT-- 491 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTC 130251 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | | Sbjct 490 --CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGC 433 Query 130252 A--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 130309 | | | | ||||||| || | |||| |||||||| |||| | || || ||| Sbjct 432 AACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGTAT 376 Query 130310 GTTTCGCCATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGC 130360 ||||| ||| || | ||| |||||| ||| || ||||||| ||||| Sbjct 375 GTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGC 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618226331241640