Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12610 120 4e-22 >seq12610 Length=6403 Score = 120 bits (132), Expect = 4e-22 Identities = 649/1023 (63%), Gaps = 31/1023 (3%) Strand=Plus/Plus Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||||||||| ||||| ||||||| || ||||| |||||| | || || ||||| Sbjct 2998 CATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAGTCATCAA 3057 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | || || || || ||||| || | || | |||| | ||||| || ||||| Sbjct 3058 GTGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAAGTCGCGGTGTG 3117 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 ||||| || || || || || || | ||||||| |||| ||| | | ||| | Sbjct 3118 CAACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAGGAGAGAAAAATTTACGATCA 3177 Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171 | | | || || ||||||| |||||| ||||| || || |||| || ||| | Sbjct 3178 CCAGCGGTTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGATCGATCG 3237 Query 105172 AAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 || ||| || || ||| | || || | | | | | ||||| ||||| Sbjct 3238 TAACCATTATCCTGTACCCGAGTCGCGCCG--AAGCAACGAGCTCA-ATCGTCCCATTGG 3294 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT-TGTCGCCACGCATTTGATTCCG 105287 | || || || || | ||||| || || || || || || |||| | | Sbjct 3295 AATTGGCGTGCAAGGAATGGCGGACACTTTTATCCTGATGCGGCTAC-CATTCACATGCC 3353 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 | || |||| | | |||| || ||||| || || || ||| ||| | |||| Sbjct 3354 AGGAGGCGAGGACTTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCTGTGGAGG 3413 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 |||| || | || || || || || || |||| |||| || ||| || | Sbjct 3414 CGAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAGGCAGTCCCGCGT 3473 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCTTCACTACG-AC 105463 | ||||| ||| || |||||| ||||||| | || ||| ||| | | | | Sbjct 3474 CGCAAGGCCAGCTACAGTTTGATCTGTGGGA-GCAGAAACCGCGAAGTGGCCGTTGGGAT 3532 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||||| || | ||| | || || | | | | || | || || | || ||||| Sbjct 3533 TGGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGAATTCGTTACTTTTGGCT 3592 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCCTA 105582 |||||||| || || ||||| | || || |||||| || ||||| |||||||| || | Sbjct 3593 CCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAGCCATT 3651 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642 || | || ||||| || | || || || |||||| | || |||||| | Sbjct 3652 TACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAGTA 3711 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCAT 105699 || ||| || |||| || ||||| ||| | | || ||| ||| |||| Sbjct 3712 CCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAATCAGATCAT 3771 Query 105700 GG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAG 105757 | | || ||| || | ||||| ||| || ||||||||||| | ||| || Sbjct 3772 TGCCTACAA-----TGGCTCAGTGCAAAACATTAGGGGCATTCCAAATGACCTCAAGGAG 3826 Query 105758 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGT 105817 |||| || || ||||| || | ||||||| |||| || ||||| | || ||| Sbjct 3827 CTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTGTGGACCGT 3886 Query 105818 GGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCC 105877 || ||||||||||| |||||||| ||||||| || |||||| |||||| ||| Sbjct 3887 GGCAAGTTCATTGATCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAAC---TTCC 3943 Query 105878 A---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 105934 | |||| | || |||||| | | ||| | || || || ||||| |||||| Sbjct 3944 AGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGGGCATGTAT 4003 Query 105935 TAC 105937 ||| Sbjct 4004 TAC 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583063810955560