Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq15901 161 1e-34 seq15897 161 1e-34 seq15893 161 1e-34 seq3911 161 1e-34 seq18697 159 4e-34 seq15894 141 1e-28 seq15458 131 2e-25 seq20180 98.7 1e-15 seq12610 87.8 2e-12 seq13542 86.0 7e-12 >seq15901 Length=812 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || | || ||||| || || | Sbjct 236 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 177 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 176 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 117 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | || || || |||||||| || Sbjct 116 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 57 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 56 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 10 Score = 105 bits (116), Expect = 8e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||||||| ||||| || ||||||||||| || || || ||||| ||||| || ||||| Sbjct 812 AAGGAGGGCATTCCGCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAC 753 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | ||| || || |||||||| || |||| ||||| ||||| || || || || |||| Sbjct 752 GGTCGCACGCTCGCAGACTACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGC 693 Query 27622 CTTCGCGGTGG 27632 || ||||| || Sbjct 692 CTGCGCGGCGG 682 >seq15897 Length=564 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || | || ||||| || || | Sbjct 388 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 329 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 328 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 269 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | || || || |||||||| || Sbjct 268 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 209 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 208 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 162 >seq15893 Length=595 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || | || ||||| || || | Sbjct 585 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 526 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 525 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 466 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | || || || |||||||| || Sbjct 465 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 406 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 405 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 359 >seq3911 Length=608 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || | || ||||| || || | Sbjct 352 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 411 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 412 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 471 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | || || || |||||||| || Sbjct 472 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 531 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 532 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 578 >seq18697 Length=8154 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| | ||||| || || |||||||| || | || || || ||||| | Sbjct 7428 ATGCAGATCTTCGCGAAGACACTGACGGGCAAGACGATCGCGCTCGAAGTGGAGTCCAGC 7487 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 7488 GACACCATTGAGAAAGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAACAG 7547 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | || || || |||||||| || Sbjct 7548 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACAAC 7607 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| || || || || |||| || ||||||||| Sbjct 7608 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGA 7655 >seq15894 Length=465 Score = 141 bits (156), Expect = 1e-28 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || | || ||||| || || | Sbjct 443 ATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCAGC 384 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 383 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 324 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || | | || || || |||||||| || Sbjct 323 CAGCGCCTGATCTTCGCTGGCAAGCAGCT--GGTCCGGCCGCACGCTCGCAGACTACAAC 266 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 265 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGG 219 >seq15458 Length=27458 Score = 131 bits (144), Expect = 2e-25 Identities = 221/325 (68%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 |||||| || ||||| | || || || ||||| || |||| || ||| ||||||||| Sbjct 24091 CGAGGTGTACAACCTCGCCGCACAATCGCACGTAAAAGTGTCCTTCGACACACCCGAGTA 24032 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||||| | ||| | | ||||| || | || || || || || ||| Sbjct 24031 CACGGGGCAGACGGACGGCATTGGCACGCTGAAGATCCTCGAGGCCATACGCGCCAACAA 23972 Query 24704 NNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCA 24763 || | | | || || ||||| | || || ||| | | ||||||||||| Sbjct 23971 CCTGGTGGAGACGTGCCGCTTCTACCAGGCAAGCACCAGCGAGCTCTACGGCAAGGTGCA 23912 Query 24764 GGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAA 24823 |||| ||| ||| |||||| || || || | ||||| |||||||| | ||| | || Sbjct 23911 GGAGGTGCCGCAGACGGAGAAGACGCCCTTCCACCCGCGCAGCCCGTACGCGGTGGCGAA 23852 Query 24824 GGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAA 24883 | ||| ||| | ||||| || ||||||||||||| | | || || | ||| ||||| Sbjct 23851 GCTGTACGCCTTTTGGATCACAGTGAACTACCGTGAGTCGTACGGTATTTTTGCGTGCAA 23792 Query 24884 CGGAATTCTGTTCAACCATGAGTCG 24908 ||| |||||||||||||| |||||| Sbjct 23791 CGGCATTCTGTTCAACCACGAGTCG 23767 >seq20180 Length=1155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 373/576 (65%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCC-ATCGCAAGTTTCTG 64355 || || || | ||||| |||| | ||| || |||||| ||||| | ||| | |||| Sbjct 98 TTTCCGATCAAGTACCATGATATCTGGAAGAAGTACAAGGAAGCCGAGAGCA-GCATCTG 156 Query 64356 GACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCG-ACTGGGAAAACCTAAACTCAC 64414 |||||| ||||| | ||| | || || || ||| ||||||| || | ||| | Sbjct 157 GACGGTGGAGGAAATCGATTTGAGCAGTGA-CTTGGCGGACTGGGAGAAGATGAACGAAG 215 Query 64415 AGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGT 64474 ||| || ||| |||||| || || || ||||| || ||||||| ||||||||| Sbjct 216 GGGAGAAGTTCTTTATCAAGCACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGC 275 Query 64475 TTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCT 64534 | ||||| ||| | || | | ||| || || | || |||| ||| | |||| Sbjct 276 TGGAGAACCTGGCGCAGCGGTTCATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTCT 335 Query 64535 ATGCGTATCAGGGATTT--AACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGA 64592 | | || ||| ||| | || | ||||| || || || ||| | || | || Sbjct 336 ACGGGTTCCAG--ATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGA 393 Query 64593 CAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACC 64652 | || | ||| | | |||||||| | |||| || || ||| | || Sbjct 394 TACGTACATCACAGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCC 453 Query 64653 CGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGAT--GAATCGTGGGTCGTCGTTT 64710 | |||||||| | ||||| || |||||||| | | | || |||||| Sbjct 454 GTGCATCCAGAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAGCAGCAGT--TCGTTT 511 Query 64711 GGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGT 64770 | | || || | || ||||| |||||||| ||||||||||| || || |||||| Sbjct 512 GCCGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGT 571 Query 64771 TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTG 64830 | | ||||||||||| ||||| || |||||||| || ||| |||| || || || Sbjct 572 GCGCTGTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTC 631 Query 64831 ATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCG 64866 ||||| || || || || | ||| || |||||| Sbjct 632 ATCTCGCGTGATGAAGGCTTGCACACGGACTTTGCG 667 >seq12610 Length=6403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA-CAGCT 81599 |||| || |||||||| ||||| || || || | |||| ||| ||||||| || Sbjct 2493 TTCAATGTATCATAAATCCCCTCAATACTGTCCTCCCGCATGGCAA-CAAGAAAACAAGA 2435 Query 81600 TGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATA 81659 ||| ||||| || ||||||||||| | ||| || || || || |||| || Sbjct 2434 ACTCATTTGAGGAAAAGGTGTTCCGGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTA 2375 Query 81660 ACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACC 81719 | ||||| ||||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 2374 CCCAAGAGACATATGGTCATATGTCTCCTTTACGCGCTCCATATCCTCACCGTGAATACC 2315 Query 81720 GATAGCTACACGCATAAACATGTACTGGGG 81749 | ||| || |||| |||||| | ||| || Sbjct 2314 AAGAGCGACGCGCAAAAACATTTGCTGCGG 2285 >seq13542 Length=2922 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/168 (72%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 15241 ACCTCACCGTACACCTCATCCGTGCTTATATGAATAAACTTTTTAAGCTTGCCGTAATCC 15300 |||| || |||||||| || ||||| | |||||||||||||| | | | || || | Sbjct 2102 ACCTGTCCATACACCTCGTCTGTGCTAACATGAATAAACTTTTCTATCCTACCATACGTC 2043 Query 15301 TTGGCGGTCTCGAGAAGCACGTGCGTCCCGAGTACGTTATCCTTTGTAAACTGAAAAGAC 15360 |||| ||| |||||||| |||||||| || ||||||| | || || | |||||| Sbjct 2042 CGGGCGCACTCAAGAAGCACATGCGTCCCAAGGACGTTATTATACGTGAA--GGAAAGAC 1985 Query 15361 TGTT--CGAAACTGCGGTCAACGCACGACTGTGCCGCAAAGTGAATGA 15406 | || | ||||| ||| ||| ||| |||||||||| ||||| Sbjct 1984 TATTACCAAAACTATTGTCCACGTGGCTCTGCGCCGCAAAGTTAATGA 1937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570117784791280