Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq15901 104 2e-17 seq15893 96.9 3e-15 seq15894 89.7 4e-13 >seq15901 Length=812 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| || || ||||| |||||| | || | || || |||||| | Sbjct 238 CCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCA 179 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || || || ||||| || ||||| || || || | Sbjct 178 GCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 119 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| ||||| || |||| ||| | || | | || |||| Sbjct 118 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACA 59 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || | || |||| |||| || ||||| Sbjct 58 ACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGCAT 7 >seq15893 Length=595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||||||||| || || ||||| |||||| | || | || || |||||| | Sbjct 589 CGGCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATC 530 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||| | ||||||| || || || || || ||||| || ||||| || || || Sbjct 529 CAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGA 470 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||| ||||| || |||| ||| | || | | || || Sbjct 469 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTA 410 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || |||||||| || Sbjct 409 CAACATCCAGAAGGAGTCCAC 389 >seq15894 Length=465 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||||||||| || || ||||| |||||| | || | || || |||||| | Sbjct 447 CGGCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATC 388 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||| | ||||||| || || || || || ||||| || ||||| || || || Sbjct 387 CAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGA 328 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATT 27162 || ||||| | || | ||| ||||| || || | | | || || | | || | Sbjct 327 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTG---GTCCGGCCGCACGCTCGCAGACT 271 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| || |||||||| || | || | || |||| |||| || ||||| Sbjct 270 ACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGCAT 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434771511746880