Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7154 91.5 1e-13 >seq7154 Length=3127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 446/708 (63%), Gaps = 5/708 (1%) Strand=Plus/Plus Query 34096 GGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGA 34155 |||| ||||||||| | |||| || ||| | | ||||| | |||| || Sbjct 1806 GGAGGAGCAGTATCTAAGCCTTGTGGATCGCATCATACGCGAGGGGAATGTGAAGCATGA 1865 Query 34156 CCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGG 34215 ||| || ||| ||| || |||||| | || ||| ||||| || | | || || Sbjct 1866 CCGCACTGGGGTGGGCACGCTCTCCATCTTTGGCGCACAGATGCGTTTCTCGCTCCGCAA 1925 Query 34216 CGAAT----TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGC 34271 | ||| | || || |||| ||||| || || | ||| || ||| |||||| | Sbjct 1926 C-AATCGCCTACCACTTTTGACAACGAAGCGGGTTTTTTGGCGCGGTGTGTGCGAGGAAC 1984 Query 34272 TGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGA 34331 |||||||||| | |||| | || | |||| || | | ||| || | | Sbjct 1985 TGCTGTGGTTTCTACGGGGCGAAACATATGCCAAAAAGTTAAGTGACAAGGGAGTCCACA 2044 Query 34332 TCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG 34391 | ||||||| |||| || || | ||||| |||| || || || || |||| Sbjct 2045 TATGGGACGACAACGGCTCGCGCGCGTTTCTTGACAGTCGTGGCCTCACAGAGTACGAGG 2104 Query 34392 AGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGG 34451 || ||| | || || |||||||| || |||||| | |||||||| || | || Sbjct 2105 AGATGGACCTCGGTCCTGTCTACGGCTTTCAGTGGCGTCACTTTGGTGCCGCCTACACAC 2164 Query 34452 GGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT 34511 || || ||||| |||||||| | ||| || | || | | || || Sbjct 2165 ACCATGATGCCAACTATGACGGACAGGGGGTGGATCAAATCAAGGCAATCGTTGAAACAC 2224 Query 34512 TGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571 | ||| ||| ||||| || | |||| | | || ||||| |||| | | | | Sbjct 2225 TAAAGACGAATCCTGACGATCGCCGGATGCTCTTCACGGCATGGAATCCGAGCGCTTTGC 2284 Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 | |||||| || || ||||||||| ||| || || ||||| |||||||| | Sbjct 2285 CCAGGATGGCCCTACCACCGTGCCACCTGCTCGCACAGTTTTACGTGAGCAATGGGGAAC 2344 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||| |||||| || || || | |||||||| | || || ||||||||||||| Sbjct 2345 TGTCTTGCATGCTCTACCAGCGCTCATGTGACATGGGCCTTGGCGTCCCGTTCAACATTG 2404 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGC 34751 | ||||| || | || | | ||||| | | |||| || || || ||| Sbjct 2405 CCTCCTACGCCCTCTTGACCATCCTCATCGCAAAGGCGACGGGGCTGCGGCCGGGAGAGT 2464 Query 34752 TGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 ||||||| || | || || || || | ||| || ||| |||||| Sbjct 2465 TGGTGCACACCCTTGGTGACGCTCACGTGTACAGCAATCACGTCGAGC 2512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 446/708 (63%), Gaps = 5/708 (1%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||||| ||| || ||| | || || || || | || ||||||| ||| || || Sbjct 2512 GCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGGCC 2453 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || |||| | | ||||| | | || | || ||||| ||||||||||||| Sbjct 2452 GCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAACG 2393 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 | || || | |||||||| | || || || |||||| ||| ||||| |||||||| Sbjct 2392 GGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATTGC 2333 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||| || || ||| ||||||||| || || |||||| || | | | ||| Sbjct 2332 TCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTCG 2273 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | ||||| || | | |||| | || ||||| ||| ||| | || || | | Sbjct 2272 GATTCCATGCCGTGAAGAGCATCCGGCGATCGTCAGGATTCGTCTTTAGTGTTTCAACGA 2213 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905 || | || ||| | |||||||| ||||| || || || | | Sbjct 2212 TTGCCTTGATTTGATCCACCCCCTGTCCGTCATAGTTGGCATCATGGTGTGTGTAGGCGG 2153 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | |||||||| | |||||| || |||||||| || || | ||| |||||| || Sbjct 2152 CACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGGTCCATCTCCTCGTACTCTG 2093 Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 || || || |||| ||||| | || || |||| ||||||| || | || ||| Sbjct 2092 TGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGGACTCCCT 2033 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 | | || |||| | || | |||| | ||||||||||| |||||| || Sbjct 2032 TGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCCTCGCACA 1973 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA----ATTCGCCCCGAAGGTTG 7141 | || ||| | || || ||||| |||| || || | ||| | || || | Sbjct 1972 CACCGCGCCAAAAAACCCGCTTCGTTGTCAAAAGTGGTAGGCGATT-GTTGCGGAGCGAG 1914 Query 7142 TATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGG 7201 | || ||||| ||| || | |||||| || ||| ||| || ||||| |||| Sbjct 1913 AAACGCATCTGTGCGCCAAAGATGGAGAGCGTGCCCACCCCAGTGCGGTCATGCTTCACA 1854 Query 7202 TAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCC 7249 | ||||| | | ||| || |||| | ||||||||| |||| Sbjct 1853 TTCCCCTCGCGTATGATGCGATCCACAAGGCTTAGATACTGCTCCTCC 1806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448111004977680