Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3911 152 1e-31 seq15897 150 4e-31 seq15901 149 1e-30 seq15893 147 5e-30 seq18697 138 3e-27 seq15894 131 4e-25 >seq3911 Length=608 Score = 152 bits (168), Expect = 1e-31 Identities = 182/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| || ||||| || || |||| ||||| || || | || Sbjct 572 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 513 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 512 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 453 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||||||| || |||||| || | | Sbjct 452 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 393 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT--TTTATGGTTACTTACCG 225730 | ||||||||||||||||| || || | ||| | ||||| ||| ||| || || | Sbjct 392 GCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATGGTTTCGTGTTCCTAACAG 333 Query 225731 CCTGTT 225736 | |||| Sbjct 332 CGTGTT 327 >seq15897 Length=564 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| || ||||| || || |||| ||||| || || | || Sbjct 168 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 227 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 228 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 287 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||||||| || |||||| || | | Sbjct 288 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 347 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||||||||||||||| || || | ||| | ||||| Sbjct 348 GCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 388 >seq15901 Length=812 Score = 149 bits (164), Expect = 1e-30 Identities = 181/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| || ||||| || || |||| ||||| || || | || Sbjct 16 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 75 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 76 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 135 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||||||| || |||||| || | | Sbjct 136 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 195 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT--TTTATGGTTACTTACCG 225730 | ||||||||||||||||| || || | || | ||||| ||| ||| || || | Sbjct 196 GCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATGGTTTCGCGTTCCTAACAG 255 Query 225731 CCTGTT 225736 | |||| Sbjct 256 CGTGTT 261 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| || ||||| || || |||| ||||| || || | || Sbjct 688 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 747 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 748 CGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 807 Query 225613 TCCTT 225617 ||||| Sbjct 808 TCCTT 812 >seq15893 Length=595 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| || ||||| || || |||| ||||| || || | || Sbjct 365 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 424 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 425 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 484 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||||||| || |||||| || | | Sbjct 485 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 544 Query 225673 GTGATCGTCTTGCCCGTCA 225691 | ||||||||||||||||| Sbjct 545 GCGATCGTCTTGCCCGTCA 563 >seq18697 Length=8154 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| || ||||| || || |||| ||||| || || | || Sbjct 7648 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 7589 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || || || |||||||| || Sbjct 7588 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGGAATGCCC 7529 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||||||| || ||||| || | | Sbjct 7528 TCCTTGTCCTGGATCTTCGCCTTCACTTTCTCAATGGTGTCGCTGGACTCCACTTCGAGC 7469 Query 225673 GTGATCGTCTTGCCCGTCA 225691 | ||||||||||||||||| Sbjct 7468 GCGATCGTCTTGCCCGTCA 7450 >seq15894 Length=465 Score = 131 bits (144), Expect = 4e-25 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| || ||||| || || |||| ||||| || || | || Sbjct 225 CGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTG 284 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || | |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 285 CGGCCGGA--CCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 342 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||||||| || |||||| || | | Sbjct 343 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGC 402 Query 225673 GTGATCGTCTTGCCCGTCA 225691 | ||||||||||||||||| Sbjct 403 GCGATCGTCTTGCCCGTCA 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192118368431186