Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7154 116 3e-21 >seq7154 Length=3127 Score = 116 bits (128), Expect = 3e-21 Identities = 378/576 (66%), Gaps = 12/576 (2%) Strand=Plus/Minus Query 27144 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 27203 ||| || ||||||| ||| ||||||||||| || |||||||| || ||||||||||| Sbjct 2514 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 2455 Query 27204 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 27263 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 2454 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 2395 Query 27264 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATC 27323 || || || || |||||||| | || | |||||||||| || || || || |||| Sbjct 2394 CGGGACGCCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATT 2335 Query 27324 GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 27383 ||| ||||||||||| | ||||||||| || || ||||| | ||| | | Sbjct 2334 GCTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCT 2275 Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443 || ||||| || | || || || | || || || || || | | || || Sbjct 2274 CGGATTCCATGCCGTGAAGAGCATCCGGCGATCGTCAGGATTCGTCTTTAGTGTTTCAAC 2215 Query 27444 G-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCAT-GTCCGTGTAC 27501 | | ||| | |||||||||||| || |||| | | |||| || ||||| Sbjct 2214 GATTGCCTTG-ATTTGATCCACCCCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAG 2157 Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561 | || || || || | ||| || || ||||| || || || ||| ||| || ||| | Sbjct 2156 GCGGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCG 2100 Query 27562 TGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | ||| || ||| | |||| | ||| | | || |||||| ||||||| || | Sbjct 2099 TACTCTGTGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGG 2040 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 27678 || ||||| || | || ||||| | ||| || | | ||||||||||| ||| Sbjct 2039 ACTCCCTTGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCC 1980 Query 27679 TC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 27713 || ||| || | |||||| |||| ||| || || Sbjct 1979 TCGCAC-ACACCGCGCCAAAAAACCCGCTTCGTTGT 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369385523472989