Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12610 154 2e-32 >seq12610 Length=6403 Score = 154 bits (170), Expect = 2e-32 Identities = 297/438 (68%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 ||| || |||| ||| || || ||||| ||||| ||||| ||| | |||||| | || Sbjct 2815 CTTCACACGTTCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGTGCCCT 2756 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 ||| ||||| || || ||||| || || | | ||||| | | |||||| |||||| Sbjct 2755 ATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCA 2696 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCT 78178 || |||| || || || | | || || || ||| |||||||||| ||| | Sbjct 2695 AGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGCTTTCCACCCCCCTGATCTACATAGCG 2636 Query 78179 GGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 || |||||||| |||| | | ||| || | || ||||| || |||||||| || Sbjct 2635 AGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCC 2576 Query 78239 AGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCAT 78298 || ||| || || || ||| ||||| | | | || || || || || Sbjct 2575 AGCAATGTAGCTCCCGGAACAGCGGATATTGTGCACGTGGACGCCAATGCCACCAGCTGA 2516 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 ||| ||| | ||||| | ||||||||||| || || ||||| |||||||| ||| Sbjct 2515 TTTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCCCG 2456 Query 78359 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGT 78418 |||| || ||||||||| | ||||||| || | ||||| ||||| |||||||| Sbjct 2455 CATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGTGTTCCGGCATTGAATAATGT 2396 Query 78419 CGGAGATGCATGCGTAAA 78436 ||| | ||||| || || Sbjct 2395 CGGTGTGGCATGTGTGAA 2378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694434184296160