Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3911 174 1e-38 seq15897 172 4e-38 seq15901 165 6e-36 seq15893 163 2e-35 seq18697 159 2e-34 seq15894 154 1e-32 >seq3911 Length=608 Score = 174 bits (192), Expect = 1e-38 Identities = 180/233 (77%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || Sbjct 582 CATGCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 523 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| ||| |||| ||||||||||| || || ||||||| |||||||| || | Sbjct 522 TGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 463 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| ||||| |||| | ||||||||| ||||| Sbjct 462 CGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCAATGGTGTCGCTGGATT 404 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || |||||||| ||||| || |||||||||||||| |||||| Sbjct 403 CCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 351 >seq15897 Length=564 Score = 172 bits (190), Expect = 4e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || ||| Sbjct 162 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 221 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || || ||||||| |||||||| || | || Sbjct 222 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 281 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | ||||||||| ||||||||| Sbjct 282 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCAATGGTGTCGCTGGATTCCAC 340 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || |||||||| ||||| || |||||||||||||| |||||| Sbjct 341 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 389 >seq15901 Length=812 Score = 165 bits (182), Expect = 6e-36 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || Sbjct 6 CATGCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 65 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| ||| |||| ||||||||||| || || ||||||| |||||||| || | Sbjct 66 TGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 125 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| |||| | |||| | ||||||||| ||||| Sbjct 126 CGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCAATGGTGTCGCTGGATT 184 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || |||||||| ||||| || |||||||| || || |||||| Sbjct 185 CCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATG 237 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || ||| Sbjct 682 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 741 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || || ||||||| |||||||| || | || Sbjct 742 AGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 801 Query 44231 ACACCTTCCTT 44241 | || ||||| Sbjct 802 ATGCCCTCCTT 812 >seq15893 Length=595 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || ||| Sbjct 359 CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 418 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || || ||||||| |||||||| || | || Sbjct 419 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 478 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | ||||||||| ||||||||| Sbjct 479 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCAATGGTGTCGCTGGATTCCAC 537 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || |||||||| ||||| || |||||||| || || |||||| Sbjct 538 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATG 586 >seq18697 Length=8154 Score = 159 bits (176), Expect = 2e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || || Sbjct 7655 TCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 7596 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| ||| |||| ||||||||||| || || ||||||| |||||||| || | || Sbjct 7595 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGG 7536 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| ||||| | | | ||||||||| ||| ||||| Sbjct 7535 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACTTTCTCAATGGTGTCGCTGGACTCCAC 7476 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| ||||| || |||||| ||||||| ||||| Sbjct 7475 TTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCGCGAAGATCTGCAT 7428 >seq15894 Length=465 Score = 154 bits (170), Expect = 1e-32 Identities = 176/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| |||||| |||||| ||||||||||| || Sbjct 215 CATGCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 274 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| ||| || | |||||||||| || || ||||||| |||||||| || | Sbjct 275 TGCGAGCGTGCGGCCG--GACCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 332 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| ||||| |||| | ||||||||| ||||| Sbjct 333 CGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCAATGGTGTCGCTGGATT 391 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || |||||||| ||||| || |||||||| || || |||||| Sbjct 392 CCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATG 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359871857298723