Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq15897 190 2e-43 seq3911 190 2e-43 seq15901 185 8e-42 seq15893 183 3e-41 seq15894 172 5e-38 seq18697 170 2e-37 >seq15897 Length=564 Score = 190 bits (210), Expect = 2e-43 Identities = 188/242 (78%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| |||||||| || || | ||| || ||||||||| ||||||||| ||||| | Sbjct 155 CATCACA-CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 213 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | ||| ||||| |||| || ||||||||||| ||||| ||||||||||| |||| Sbjct 214 AGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 273 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| |||| || |||||||||| ||| || ||||| | | |||||||| | Sbjct 274 CCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGG 333 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTAT 41867 | |||||||| | || ||||| || |||||||| ||||| ||||| ||||||||| | | Sbjct 334 ATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATGGTTT 393 Query 41868 CG 41869 || Sbjct 394 CG 395 >seq3911 Length=608 Score = 190 bits (210), Expect = 2e-43 Identities = 183/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | ||| || ||||||||| ||||||||| ||||| ||||| | Sbjct 579 GCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 520 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| || ||||||||||| ||||| ||||||||||| ||||||| || Sbjct 519 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 460 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | |||||||| || ||||| Sbjct 459 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCAC 400 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 ||| | || ||||| || |||||||| ||||| ||||| ||||||||| | ||| Sbjct 399 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATGGTTTCG 345 >seq15901 Length=812 Score = 185 bits (204), Expect = 8e-42 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | ||| || ||||||||| ||||||||| ||||| ||||| | Sbjct 9 GCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 68 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| || ||||||||||| ||||| ||||||||||| ||||||| || Sbjct 69 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 128 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | |||||||| || ||||| Sbjct 129 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCAC 188 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 ||| | || ||||| || |||||||| ||||| || || ||||||||| | ||| Sbjct 189 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATGGTTTCG 243 Score = 131 bits (144), Expect = 2e-25 Identities = 113/139 (81%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| |||||||| || || | ||| || ||||||||| ||||||||| ||||| | Sbjct 675 CATCACA-CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 733 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | ||| ||||| |||| || ||||||||||| ||||| ||||||||||| |||| Sbjct 734 AGTCTGCGAGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 793 Query 41748 CCGCGGGAACGCTCTCCTT 41766 ||| |||| || |||||| Sbjct 794 CCGGCGGAATGCCCTCCTT 812 >seq15893 Length=595 Score = 183 bits (202), Expect = 3e-41 Identities = 183/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| |||||||| || || | ||| || ||||||||| ||||||||| ||||| | Sbjct 352 CATCACA-CCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 410 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | ||| ||||| |||| || ||||||||||| ||||| ||||||||||| |||| Sbjct 411 AGTCTGCGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGT 470 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| |||| || |||||||||| ||| || ||||| | | |||||||| | Sbjct 471 CCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGG 530 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||||||| | || ||||| || |||||||| ||||| || || ||||||||| Sbjct 531 ATTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATG 586 >seq15894 Length=465 Score = 172 bits (190), Expect = 5e-38 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | ||| || ||||||||| ||||||||| ||||| ||||| | Sbjct 218 GCCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 277 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| || | | ||||||||||| ||||| ||||||||||| ||||||| || Sbjct 278 GAGCGTGCGGCCG--GACCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 335 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | |||||||| || ||||| Sbjct 336 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGATTCCAC 395 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || |||||||| ||||| || || ||||||||| Sbjct 396 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAATATCTGCATG 444 >seq18697 Length=8154 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || ||||||||| ||||||||| ||||| ||||| | | Sbjct 7654 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 7595 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||||||||| || |||| ||| Sbjct 7594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGTTCCGGCGGA 7535 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | |||||||| |||||||| Sbjct 7534 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACTTTCTCAATGGTGTCGCTGGACTCCACT 7475 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || |||||||| ||||| |||| |||||||| Sbjct 7474 TCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCGCGAAGATCTGCAT 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462147862602800