Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq5240 1005 0.0 seq10087 751 0.0 seq13611 412 1e-110 >seq5240 Length=752 Score = 1005 bits (1114), Expect = 0.0 Identities = 586/604 (97%), Gaps = 1/604 (0%) Strand=Plus/Minus Query 4828 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4887 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 604 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 545 Query 4888 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4947 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 485 Query 4948 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5007 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 484 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 425 Query 5008 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5067 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 424 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 365 Query 5068 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5127 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 364 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 305 Query 5128 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 245 Query 5188 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 5247 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 244 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 185 Query 5248 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 5307 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 125 Query 5308 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTT-TTTTGATTTCAGAATTAGCCTG 5366 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 124 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 65 Query 5367 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5 Query 5427 GCAA 5430 |||| Sbjct 4 GCAA 1 Score = 269 bits (298), Expect = 1e-67 Identities = 231/283 (82%), Gaps = 17/283 (6%) Strand=Plus/Minus Query 60152 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 60211 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 604 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 545 Query 60212 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 60271 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 485 Query 60272 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTAGCAGATGG 60331 | ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct 484 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 425 Query 60332 GGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGATTGCGCTGCAATTCT 60383 || | | | ||| |||| || |||| | | |||||||| |||||| Sbjct 424 AGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG-----TTGCGCTGTAATTCT 373 Query 60384 TCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 60425 || ||||| | || || ||||| |||||||| |||| || Sbjct 372 TCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 330 Score = 134 bits (148), Expect = 5e-27 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 59872 CCAACCGTAAGCGCAATCTCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 59931 || || || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 59932 CTTTCCTGTTCATCCAGCAGTGCCAGCAC 59960 |||||| |||||||||||||| ||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 Score = 134 bits (148), Expect = 5e-27 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 4548 CCAACCGTAAGCGCAATCTCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 4607 || || || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 4608 CTTTCCTGTTCATCCAGCAGTGCCAGCAC 4636 |||||| |||||||||||||| ||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 >seq10087 Length=869 Score = 751 bits (832), Expect = 0.0 Identities = 523/610 (86%), Gaps = 40/610 (7%) Strand=Plus/Minus Query 13462 TCACAAAGAAAAAATCCCCGGTGGCCGCCGGGGACTCTAAGCAAATTGATATGCAATTCT 13521 |||| || |||||| ||||| ||| ||| | ||| | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 13522 GAGGGAATTACTGGATCAATCCACAGGAGTCATTATGACAAATACAGCAAAAATACTCAA 13581 |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAATACAGCAAAAATACTCAA 452 Query 13582 CTTCGGCAGAGGTAACTTTGCCGAACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTA 13641 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 451 CTTCGGCAGAGGTAACTTTGCCGGACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTA 392 Query 13642 CGCCAGACTATCAAATATGCTGATTGAGGCTTATTCAGGCGCAGATCTGACCAAGCGACA 13701 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 391 CGCCAGACTATCAAATATGCTGCTTGAGGCTTATTCGGGCGCAGATCTGACCAAGCGACA 332 Query 13702 GTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAG 13761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 GTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAG 272 Query 13762 AATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGTCAAACGGTGCAATGAAGC 13821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 AATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGTCAAACGGTGCAATGAAGC 212 Query 13822 CAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAA 13881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 CAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAA 152 Query 13882 TAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAGGTTCCCCTAAAATGAGGGN 13941 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 151 TAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAAATCCCCTAAAACGAGGG- 93 Query 13942 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAACATCCCTCAAATTAGG 14001 |||||||||||||||||| || Sbjct 92 --------------------------------------ATAAAACATCCCTCAAATTGGG 71 Query 14002 GGATTGCTNnnnnnnnnnnnnnnnggacacaaaagacactattacaaaag-aaaaaagaa 14060 |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 70 GGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAAAGAAAAAAAGAA 11 Query 14061 aagaTTATTC 14070 |||||||||| Sbjct 10 AAGATTATTC 1 >seq13611 Length=919 Score = 412 bits (456), Expect = 1e-110 Identities = 307/357 (86%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 27646 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 27705 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 566 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 625 Query 27706 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 27765 ||| | | |||||| || | ||||||||||||||| |||| |||||||||||||||||| Sbjct 626 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCG 685 Query 27766 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 27825 ||||||||||||||| ||| ||||||||| ||||| | |||||||||||| |||||||| Sbjct 686 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGT 745 Query 27826 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACCGTG 27885 | ||||||||||||||||||| || ||| ||||| || ||| || | | ||| Sbjct 746 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG-TCAG--TCAGTG 802 Query 27886 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 27945 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 803 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 862 Query 27946 GCTGAACGGGATTATTTCATCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 28002 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 863 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197153322238080