Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq516 114 1e-20 seq12641 109 6e-19 seq278 109 6e-19 >seq516 Length=139422 Score = 114 bits (126), Expect = 1e-20 Identities = 301/454 (66%), Gaps = 13/454 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||| || | ||||| || | ||| ||||| || || || Sbjct 84278 AGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTC 84337 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||| ||||| || || ||||||| |||||| | |||| || || || |||||| Sbjct 84338 AGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCGGAAAAG 84397 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||| || || | ||||| || | | ||||| || ||| | | || | Sbjct 84398 AAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAA-CTGCTGC--TG 84454 Query 16379 CGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || ||||| | | | |||| | ||| |||| | || || || || ||| Sbjct 84455 CGGATCCA---CCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATG 84511 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | |||| || || |||| |||| | || |||||||| | || | | Sbjct 84512 GCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAACACCGAG 84571 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| || || | |||||| ||||| ||||| || || |||||||| || ||||| Sbjct 84572 TATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC 84631 Query 16556 GCTATTTGTACTTCCACGTAA--AATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | || ||||||||| || | || || | |||||||||||| ||| || || |||| Sbjct 84632 GGTACCTGTACTTCC--GTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCAC 84689 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||| ||||| ||||||| | |||||| || || Sbjct 84690 TTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 84723 >seq12641 Length=906 Score = 109 bits (120), Expect = 6e-19 Identities = 300/454 (66%), Gaps = 13/454 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||| || | ||||| || | ||| ||||| || || || Sbjct 545 AGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTC 486 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||| ||||| || || ||||||| |||||| | |||| || || || |||||| Sbjct 485 AGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAG 426 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||| || || | ||||| || | | ||||| || ||| | | || | Sbjct 425 AAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAA-CTGCTGC--TG 369 Query 16379 CGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || ||||| | | | |||| | ||| |||| | || || || || ||| Sbjct 368 CGGATCCA---CCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATG 312 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | |||| || || |||| |||| | || |||||||| | ||| | | Sbjct 311 GCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAG 252 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| || || | |||||| ||||| ||||| || || |||||||| || ||||| Sbjct 251 TATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC 192 Query 16556 GCTATTTGTACTTCCACGTAA--AATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | || ||||||||| || | || || | ||||||||||| ||| || || |||| Sbjct 191 GGTACCTGTACTTCC--GTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCAC 134 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||| ||||| ||||| | | |||||| || || Sbjct 133 TTGCGGCAAAGAACGCTAGCACGTGCTTGATAAA 100 >seq278 Length=37984 Score = 109 bits (120), Expect = 6e-19 Identities = 300/454 (66%), Gaps = 13/454 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||| || | ||||| || | ||| ||||| || || || Sbjct 23871 AGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTC 23930 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||| ||||| || || ||||||| |||||| | |||| || || || |||||| Sbjct 23931 AGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAG 23990 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||| || || | ||||| || | | ||||| || ||| | | || | Sbjct 23991 AAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAA-CTGCTGC--TG 24047 Query 16379 CGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || ||||| | | | |||| | ||| |||| | || || || || ||| Sbjct 24048 CGGATCCA---CCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATG 24104 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | |||| || || |||| |||| | || |||||||| | ||| | | Sbjct 24105 GCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAG 24164 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| || || | |||||| ||||| ||||| || || |||||||| || ||||| Sbjct 24165 TATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC 24224 Query 16556 GCTATTTGTACTTCCACGTAA--AATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | || ||||||||| || | || || | ||||||||||| ||| || || |||| Sbjct 24225 GGTACCTGTACTTCC--GTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCAC 24282 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||| ||||| ||||| | | |||||| || || Sbjct 24283 TTGCGGCAAAGAACGCTAGCACGTGCTTGATAAA 24316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511225847903400