Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq278 134 2e-26 seq516 131 2e-25 seq12641 127 2e-24 seq594 105 8e-18 >seq278 Length=37984 Score = 134 bits (148), Expect = 2e-26 Identities = 355/532 (67%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 24244 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 23925 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 23983 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GC 24303 ||||||||||| ||||| || ||||||||||||| ||| | |||| || ||| | || Sbjct 23984 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGC 24042 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 24043 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 24102 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 24421 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 24103 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 24162 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | ||| |||||||||||| ||| |||||||| || || || |||||||| || | | Sbjct 24163 AGTAT--GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 24220 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||| | | ||||||||| | || || | || | || || ||| ||||| || Sbjct 24221 CTCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATC 24280 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 ||| || ||||| ||||| | || || || ||||| | || || || | | || Sbjct 24281 ACTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTT 24340 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-CT 24660 | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| || Sbjct 24341 CTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTCT 24399 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 24712 | || | || ||| | |||||||| |||||||| | || ||||| || || Sbjct 24400 CGGCTTCCTTGTACTTCTTCCAGATATCATGATACTTGATCGGAAAGATCAC 24451 >seq516 Length=139422 Score = 131 bits (144), Expect = 2e-25 Identities = 271/396 (68%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 24244 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 84332 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCG-CACAGAAGGAGCC 84390 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GC 24303 ||||||||||| ||||| || ||||||||||||| ||| | ||| || ||| | || Sbjct 84391 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGC 84449 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 84450 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 84509 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA--G 24421 | || | || | || || || | ||||| | | || ||||| | ||| | | Sbjct 84510 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAACACCG 84569 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | ||| |||||||||||| ||| |||||||| || || || |||||||| || | | Sbjct 84570 AGTAT--GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 84627 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||| | | ||||||||| | || || | || | || || ||| ||||| || Sbjct 84628 CTCCGGTACCTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATC 84687 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 ||| || ||||| ||||||| || || || ||||| Sbjct 84688 ACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 84723 >seq12641 Length=906 Score = 127 bits (140), Expect = 2e-24 Identities = 270/396 (68%), Gaps = 8/396 (2%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 24244 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 491 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 433 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GC 24303 ||||||||||| ||||| || ||||||||||||| ||| | |||| || ||| | || Sbjct 432 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGC 374 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 373 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 314 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 24421 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 313 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 254 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | ||| |||||||||||| ||| |||||||| || || || |||||||| || | | Sbjct 253 AGTAT--GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 196 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||| | | ||||||||| | || || | || | || || ||| ||||| || Sbjct 195 CTCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATC 136 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 ||| || ||||| ||||| | || || || ||||| Sbjct 135 ACTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAA 100 >seq594 Length=267672 Score = 105 bits (116), Expect = 8e-18 Identities = 294/450 (65%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||||| || ||||| || | |||||| || | ||| || || |||||||||||||| Sbjct 92919 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGCTCCATGAATAGGTCAGGAATCCAAAG 92978 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 92979 AGCGTAAAACAAATCTCGCGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 93038 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 || | |||||| |||||| || || ||||| |||| | | || || || Sbjct 93039 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGCTT 93098 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 | || |||||||||| || | || |||||||| |||| | | ||| || | || Sbjct 93099 GCCACCCCCCTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 93158 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC---ACTGGCACGAATATTACT 54297 || || || ||||| ||||| | || ||||| || || | || ||||| Sbjct 93159 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 93215 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 | | || || || || || |||| || | |||||| | || || ||||| Sbjct 93216 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 93275 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 ||| || ||||| ||||| || ||| |||| || |||||||| | |||||| | Sbjct 93276 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 93335 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGG 54447 | | ||||| ||||| ||||| || || Sbjct 93336 AAAAGGCGTTCCGGCATTGAATAATGTCGG 93365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593502702267600