Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq13611 1025 0.0 seq10087 89.7 1e-13 >seq13611 Length=919 Score = 1025 bits (1136), Expect = 0.0 Identities = 688/767 (90%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 37551 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 37610 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 37611 ATATGCTGGCATGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 37670 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 37671 ATGACGTCATTGTAGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 37730 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 37731 TCACGCTAAACCCCAAACTCAAATCAACAGCCGCCGGACGCTACCAGCTTCTTTCCCGTT 37790 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 37791 GGTGGGATGCCTATCGTAAGCAGCTTGGCCTGAAAGATTTCTCTCCGAAAAGCCAGGACG 37850 ||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 37851 CTGTGGCATTGCAGCAGATTAAAGAGCGTGGCGCTTTACCGATGATTGATCGCGGTGATA 37910 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 37911 TTCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGGGCTGGTTATG 37970 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 37971 GTCAGTTCGAGCATAAGGCTGACAAACTGATTGCAAAATTCAAAGAAGCTGGCGGAACGG 38030 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 38031 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 38090 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 38091 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGA 38150 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 38151 ACAGCGCGACAAA---GCC-----------GC-------ATCCACTATTGCTGACATGCA 38189 |||||||||||| ||| || | | ||| |||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 38190 GAAGCGTCAACGTGATGTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGC 38249 || |||||| |||||||| || | |||||||| | ||| || |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 38250 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 38295 ||| || || || || ||| |||| ||||||| | ||||| ||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 29796 TCACAAAGAAAAAATCCCCGGCCGCCACCGAGGATTTTAAGCAAATTGATATGCAATTCT 29855 |||| || |||||| |||||| || |||||| || | | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 29856 GAGGGAATTACTGGATCAATCCACAGGAGTAATTATGACAAA 29897 |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130235968462470