Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq13611 156 1e-33 seq5240 100 8e-17 >seq13611 Length=919 Score = 156 bits (172), Expect = 1e-33 Identities = 177/237 (75%), Gaps = 23/237 (10%) Strand=Plus/Plus Query 39022 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 39081 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 531 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 590 Query 39082 CCTACAAAGAGCAGCGCGATAAA---GCCACA----TCAATC--------------ATCG 39120 ||||||||| |||||||| ||| |||| | | || | || Sbjct 591 CCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA 650 Query 39121 CTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATACACAAAGGAGC 39180 |||| ||||||| |||||| || ||||| || | |||||||| | |||||| |||||| Sbjct 651 CTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGT 710 Query 39181 TTGCTGATGCTAACGC-GACTATCGAAACTCTCCGCGCTGATGTTTCTGCTGGGCGT 39236 | ||||||||||| || || || || |||| || | ||||||| | ||||| ||| Sbjct 711 TAGCTGATGCTAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq5240 Length=752 Score = 100 bits (110), Expect = 8e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 25309 CCAACCGTAAGCGCAATATCCTCGTCCTCCTGGTCGCGGAGTTTGATGTATTGCTGTTTT 25368 || || || |||||||||||||||| ||||||||||||| |||||||||||||||| ||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 25369 TTATCCAGCTCATCCAGCAG 25388 | ||| | ||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133348477914340