Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq13611 1148 0.0 seq5240 122 2e-23 >seq13611 Length=919 Score = 1148 bits (1272), Expect = 0.0 Identities = 701/744 (94%), Gaps = 0/744 (0%) Strand=Plus/Plus Query 16823 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGCAAGGCGTTCCTCG 16882 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 16883 ATATGCTGGCGTGGTCAGAGGGAACAGATAATGGACGTCAGAAAACCAGAAATCATGGTT 16942 |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 16943 ATGACGTCATTGTTGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 17002 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 17003 TCACGCTAAACCCCAAACTCAAATCAACAGCCGCCGGACGTTACCAGCTTCTTTCCCGTT 17062 ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 17063 GGTGGGATGCATACCGTAAGCAGCTTGGACTGAAAGACTTCTCTCCGAAAAGCCAGGACG 17122 |||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 17123 CTGTGGCGCTGCAGCAGATTAAGGAGCGTGGCGCTTTGCCGATGATTGATCGCGGTGATA 17182 ||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 17183 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCATTGCCGGGAGCTGGTTATG 17242 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 17243 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 17302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 17303 TCAGAGAGATTGAGGTATGAGCAGGGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 17362 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 17363 CATCGTTTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGA 17422 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 17423 GCAGCGCGACAAAAACACCAGAGAACTGAAGCTGGCGAACGCCACCATTACTGACATGCA 17482 |||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 17483 ACAGCGCCAGCTTGATGCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGC 17542 ||| |||| ||||| || ||| |||||||| |||||||||||||||||||||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 17543 GAAAGCTGAAAATGATGCTCTTCG 17566 |||||||||||||||||||| || Sbjct 721 TAAAGCTGAAAATGATGCTCTGCG 744 >seq5240 Length=752 Score = 122 bits (134), Expect = 2e-23 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 3179 CCTACCGTTAGCGCAATTTCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGTTTT 3238 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 3239 CTTTCCAGCTCATCCAGCAG 3258 |||||| | ||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122385918930210