Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq278 136 5e-27 seq516 132 6e-26 seq12641 127 3e-24 seq594 98.7 1e-15 >seq278 Length=37984 Score = 136 bits (150), Expect = 5e-27 Identities = 353/531 (66%), Gaps = 8/531 (2%) Strand=Plus/Plus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || ||| Sbjct 23925 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 23984 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33751 |||||||| || ||||| || || |||||||||| ||| | ||| || ||| | ||| Sbjct 23985 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGCT 24043 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 24044 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 24103 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGA 33869 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 24104 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 24163 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 24164 GTAT--GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 24221 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | | ||| ||||| || || || | || | || || ||| ||||||||| Sbjct 24222 TCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCA 24281 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 || || ||||| ||||| | || || || ||||| | || || || | | || Sbjct 24282 CTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTC 24341 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-CTC 34108 | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| ||| Sbjct 24342 TCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTCTC 24400 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 34159 || | || ||| | |||||||| |||||||| | ||| || || || || Sbjct 24401 GGCTTCCTTGTACTTCTTCCAGATATCATGATACTTGATCGGAAAGATCAC 24451 >seq516 Length=139422 Score = 132 bits (146), Expect = 6e-26 Identities = 269/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || ||| Sbjct 84332 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCG 84391 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33751 |||||||| || ||||| || || |||||||||| ||| | || || ||| | ||| Sbjct 84392 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGCT 84450 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 84451 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 84510 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33869 ||| | || | || || || | ||||| | | || ||||| | ||| | || Sbjct 84511 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAACACCGA 84570 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 84571 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 84628 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | | ||| ||||| || || || | || | || || ||| ||||||||| Sbjct 84629 TCCGGTACCTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCA 84688 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 || || ||||| ||||||| || || || ||||| Sbjct 84689 CTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 84723 >seq12641 Length=906 Score = 127 bits (140), Expect = 3e-24 Identities = 268/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || ||| Sbjct 491 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 432 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33751 |||||||| || ||||| || || |||||||||| ||| | ||| || ||| | ||| Sbjct 431 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGCT 373 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 372 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 313 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33869 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 312 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 253 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 252 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 195 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | | ||| ||||| || || || | || | || || ||| ||||||||| Sbjct 194 TCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCA 135 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 || || ||||| ||||| | || || || ||||| Sbjct 134 CTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAA 100 >seq594 Length=267672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 292/448 (65%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||||| || ||||| || | |||||| || | ||| || || |||||||||||||| Sbjct 92919 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGCTCCATGAATAGGTCAGGAATCCAAAG 92978 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 92979 AGCGTAAAACAAATCTCGCGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 93038 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 93039 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGCTT 93098 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 | || |||||||||| || | || |||||||| |||| | | ||| || | || Sbjct 93099 GCCACCCCCCTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 93158 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA-CGAATATTACTAA 63537 |||||||| ||||| || || | || ||| |||| || || ||||| | Sbjct 93159 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAG-CTCCCGGAACAGCGGATATTGTGCA 93217 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 | || || || || || |||| || | |||||| | || || || |||| Sbjct 93218 CGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCAT 93277 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 | || || || || || || || |||| || |||||||| | |||||| || Sbjct 93278 AAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAA 93337 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGG 63685 || ||||| ||||| ||||| || || Sbjct 93338 AAGGCGTTCCGGCATTGAATAATGTCGG 93365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629585394123600