Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq594 111 1e-19 seq278 86.0 6e-12 >seq594 Length=267672 Score = 111 bits (122), Expect = 1e-19 Identities = 333/509 (65%), Gaps = 14/509 (3%) Strand=Plus/Plus Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || || ||||| |||| ||||| | ||| | || ||| |||||| | |||| Sbjct 92947 ACACGCTCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCTATGG 93006 Query 38077 TCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 ||||| || || ||| |||||| || ||||||| ||||||||| | ||||| || Sbjct 93007 TCTTCCTTACCCGTATT-TTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCAAGG 93065 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 |||| || || | | || ||| | || |||| ||||||| | ||| | | Sbjct 93066 CTCTAAGTAGATGGCAAAGGCGCCTTTACGCTTGCCACCCCCCTGATCTACATAGCGCGC 93125 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 |||||||| | | | || ||| ||||| | || || || | ||| ||| | || | Sbjct 93126 CGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGC 93185 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTA--TCGACAATCCTATTCCACCTGCATGT 38313 || || | || | || ||||| | | ||| || || ||||| || | Sbjct 93186 AATGTAGCTCCCGGAACAGCGGATATTGTGCACGTGGACG--CCAATGCCACCAGCTGAT 93243 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || ||| | |||||||| || || |||||| | || || || |||||||| ||| Sbjct 93244 TTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCCCGC 93303 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 || | | | ||||||| | ||||||||| || || |||||||| || |||||||| Sbjct 93304 ATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCGTTCCGGCATTGAATAATGTC 93363 Query 38434 GGAGATGCATGTATGAACCATTTTTCC----GACAAATAATTATATGTTTCTATTACATC 38489 || | |||||| |||| | || |||| || | |||||| || |||| Sbjct 93364 GGTGTGGCATGTGTGAAG----TCCCCAAGAGACATATGGTCATATGTCTCCTTTACGCG 93419 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAG 38518 || ||||| | ||||||||||| |||| Sbjct 93420 CTCCATATCTTCACCGTGAATACCAAGAG 93448 >seq278 Length=37984 Score = 86.0 bits (94), Expect = 6e-12 Identities = 373/583 (64%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 |||||||| || || || ||||| || | || ||||||||| || || | Sbjct 23874 CACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGC 23933 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 |||||||||| || || || |||| ||| || | ||| || || || |||||||| Sbjct 23934 CCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAA 23993 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 || || ||||| || ||||| || || | | |||| || | || |||| ||| Sbjct 23994 ATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTGCGGATC 24053 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || | ||||| | || || || | | ||| ||||| || |||| || Sbjct 24054 CACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAAC 24113 Query 11870 AAATGCATTTTTTCTATAT--TATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 | ||| | |||| ||||| | | || ||||| | | | || ||| Sbjct 24114 A--TGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGTTT 24171 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT 11987 | ||||||| || || || || || || || || ||||| || || |||| | || Sbjct 24172 CCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACCT 24231 Query 11988 GTACATCCA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 |||| ||| ||| || | | || | ||||| ||||| |||||||| | ||| Sbjct 24232 GTACTTCCGTCATGAAC-CGCTGAGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCA 24290 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT-TTATCCCAATC 12105 || || ||||| | || || |||||| | || || ||| ||| || || ||||| || Sbjct 24291 AAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTC-GTTCATCTTCTCCCAGTC 24349 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | || || | ||||| | ||| || || ||||| | || | | | || || Sbjct 24350 CGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGATGCTGCTCTCGGCTTCCTT 24409 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACG 12208 ||| | |||||||||||||||||||| || || || || ||| Sbjct 24410 GTACTTCTTCCAGATATCATGATACTTGATCGGAAAGATCACG 24452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468352060762800