Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq594 96.9 5e-15 >seq594 Length=267672 Score = 96.9 bits (106), Expect = 5e-15 Identities = 292/450 (65%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 ||||| || ||||| || | ||| || || | ||| || || |||||||||||||| Sbjct 92919 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGCTCCATGAATAGGTCAGGAATCCAAAG 92978 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 92979 AGCGTAAAACAAATCTCGCGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 93038 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 93039 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGCTT 93098 Query 80091 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 80150 | || |||||||||| || | || |||||||| |||| | | ||| || | || Sbjct 93099 GCCACCCCCCTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 93158 Query 80151 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC---ACTGGCACGAATATTACT 80207 || || || ||||| ||||| | || ||||| || || | || ||||| Sbjct 93159 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 93215 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 | | || || || || || |||| || | |||||| | || || ||||| Sbjct 93216 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 93275 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 80327 ||| || ||||| || || || || |||| || |||||||| | |||||| | Sbjct 93276 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 93335 Query 80328 ACGACTAGTTCCCGCATTAAATAAGGTAGG 80357 | | ||||| ||||| ||||| || || Sbjct 93336 AAAAGGCGTTCCGGCATTGAATAATGTCGG 93365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718003983271800