Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq278 136 5e-27 seq12641 125 1e-23 seq516 125 1e-23 >seq278 Length=37984 Score = 136 bits (150), Expect = 5e-27 Identities = 353/522 (68%), Gaps = 17/522 (3%) Strand=Plus/Plus Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCC 42174 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 23925 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 23983 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 |||||||| || ||||| || ||||||||||||| ||| | ||| || ||| | ||| Sbjct 23984 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AAC--GAACT 24040 Query 42235 G-TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | | || |||||| ||||| | |||||| || | | || || || || Sbjct 24041 GCTGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGA 24100 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA- 42350 ||||| | || | || || || | ||||| | | || ||||| | || | Sbjct 24101 AATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCAC 24160 Query 42351 -GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 || ||| |||| ||||||| ||| |||||||| ||||| || |||||||| || | Sbjct 24161 CGAGTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGC 24218 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 |||| | ||||||||||| || || || | ||| | || || ||| ||||| Sbjct 24219 ACCTCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCA 24278 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529 ||||| || ||||| ||||| | || || || ||||| | || || || ||| || Sbjct 24279 TCACTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTC-CCCTTCGTTCAT 24337 Query 42530 -TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 || | ||| || | || | | ||| | ||| || ||||||| | ||| ||| Sbjct 24338 CTTCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGC 24396 Query 42589 T-TCTGCCTTTTTATACATATTCCAGATATCATGATA-TTGA 42628 | || || | || ||| | ||||||||||||||||| |||| Sbjct 24397 TCTCGGCTTCCTTGTACTTCTTCCAGATATCATGATACTTGA 24438 >seq12641 Length=906 Score = 125 bits (138), Expect = 1e-23 Identities = 272/398 (68%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCC 42174 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 491 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 433 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 |||||||| || ||||| || ||||||||||||| ||| | ||| || ||| | ||| Sbjct 432 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AAC--GAACT 376 Query 42235 G-TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | | || |||||| ||||| | |||||| || | | || || || || Sbjct 375 GCTGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGA 316 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA- 42350 ||||| | || | || || || | ||||| | | || ||||| | || | Sbjct 315 AATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCAC 256 Query 42351 -GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 || ||| |||| ||||||| ||| |||||||| ||||| || |||||||| || | Sbjct 255 CGAGTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGC 198 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 |||| | ||||||||||| || || || | ||| | || || ||| ||||| Sbjct 197 ACCTCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCA 138 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 ||||| || ||||| ||||| | || || || ||||| Sbjct 137 TCACTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAA 100 >seq516 Length=139422 Score = 125 bits (138), Expect = 1e-23 Identities = 272/398 (68%), Gaps = 12/398 (3%) Strand=Plus/Plus Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCC 42174 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 84332 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCG-CACAGAAGGAGCC 84390 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 |||||||| || ||||| || ||||||||||||| ||| | || || ||| | ||| Sbjct 84391 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AAC--GAACT 84447 Query 42235 G-TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | | || |||||| ||||| | |||||| || | | || || || || Sbjct 84448 GCTGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGA 84507 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA- 42350 ||||| | || | || || || | ||||| | | || ||||| | ||| | Sbjct 84508 AATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAACAC 84567 Query 42351 -GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 || ||| |||| ||||||| ||| |||||||| ||||| || |||||||| || | Sbjct 84568 CGAGTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGC 84625 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 |||| | ||||||||||| || || || | || | || || ||| ||||| Sbjct 84626 ACCTCCGGTACCTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCA 84685 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 ||||| || ||||| ||||||| || || || ||||| Sbjct 84686 TCACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 84723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670891759366200