Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq590 116 5e-21 seq516 105 1e-17 >seq590 Length=263001 Score = 116 bits (128), Expect = 5e-21 Identities = 244/364 (67%), Gaps = 0/364 (0%) Strand=Plus/Plus Query 70137 ACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAATC 70196 ||||| || |||||||| |||||| | || ||||| |||| || || ||||| |||| Sbjct 235819 ACTATGACGGACAGGGTGTGGATCAAATCAAGGCAATCGTTGAAACGCTAAAGACAAATC 235878 Query 70197 CAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCAC 70256 | ||| | |||| || | |||||||||| | ||||| | ||||| | Sbjct 235879 CTGACGATCGCCGGATGCTATTCACGGCATGGAATCCGAGCGCTTTGCCCAGGATGGCCC 235938 Query 70257 TACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAA 70316 |||||||||| ||| | || ||||||||| | | |||| || |||| ||| | Sbjct 235939 TACCACCGTGCCACCTGCTCGCACAGTTTTACGTGAGCAATGGGGAACTGTCTTGCATGC 235998 Query 70317 TGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTA 70376 | || ||| | ||||||||||| || || || || |||||||| ||| | Sbjct 235999 TCTACCAGCGCTCATGTGACATGGGCCTTGGCGTCCCGTTCAACATTGCCTCCTACGCCC 236058 Query 70377 TGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCA 70436 | ||||| | | || || | || || ||| || ||||| || |||||| Sbjct 236059 TCTTGACCATCCTCATCGCAAAGGCGACGGGGCTGCGGCCGGGAGAGTTGGTGCACACCC 236118 Query 70437 TTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGG 70496 |||| |||||||||||||| |||||| ||||||| | || | |||||| |||| | Sbjct 236119 TTGGTGACGCTCACGTGTACAGCAATCACGTCGAGCCGTGCAATGAGCAACTGAAACGTG 236178 Query 70497 AGCC 70500 ||| Sbjct 236179 TGCC 236182 >seq516 Length=139422 Score = 105 bits (116), Expect = 1e-17 Identities = 240/356 (67%), Gaps = 9/356 (3%) Strand=Plus/Minus Query 125220 CCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATG 125279 || |||||| ||||| ||||| ||||| || ||||||||||| || ||||||| Sbjct 84633 CCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATTGAGAACGTTCATTCGGAAACA 84574 Query 125280 TACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAAC 125339 ||||| || | || | |||||| ||| || | || || | || || Sbjct 84573 TACTCGGTGTTGTTGGATACGTACATCACAGATACGGAGGAGAAGGACCGCATGTTGCAC 84514 Query 125340 GCAAT--CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG 125397 || || ||||| | |||| || | |||||||| | |||| ||||||||||||| Sbjct 84513 GCCATTTCGACAA--TTCCGTGCATCCAGAAAAAGGCCAACTGGGCGATTCGGTGGATC- 84457 Query 125398 ATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCT 125457 | || ||||| ||||| | || || || || || || || || || || | Sbjct 84456 --CGCAGCAGCAGTTCGTTTGCCGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTT 84399 Query 125458 TCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 |||||| ||| | || || || |||| ||||| |||||||| || || |||||||| Sbjct 84398 TCTTTTCCGGCTCCTTCTG-TGCGCTCTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGG 84340 Query 125517 CTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| |||||| || | || || || || || ||| | ||| |||||||| Sbjct 84339 CTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTTTGC 84284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740785980736200