Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq13611 273 6e-69 >seq13611 Length=919 Score = 273 bits (302), Expect = 6e-69 Identities = 277/360 (77%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 38077 CATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACC---GCCAGTCATAGT 38133 |||||||| || ||||||||| || ||| | ||||| || | ||||| | Sbjct 569 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA--- 625 Query 38134 CTGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCC 38193 |||| ||||||||||| | | || | || ||| || |||| |||||||| ||||| || Sbjct 626 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCG 685 Query 38194 CTTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGC 38253 || ||||||| ||| || |||||| | |||||||| |||||||| ||||||||| |||| Sbjct 686 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGT 745 Query 38254 GATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTGTCG 38313 |||||||| |||||||| |||||||| ||| | |||| || ||||| ||||| Sbjct 746 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTG--- 802 Query 38314 ACAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGCCCGCCCCAGACTGGCAGAC 38373 || || ||||| ||||| || ||||||||||||||||| |||| ||||||||||| Sbjct 803 ---CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGAC 859 Query 38374 TCCGCTCAACGGGATTATTTCACCCTCAAAGAGCGAGTGACAACAATGCAAAAGCAACTG 38433 ||||| ||||||||||||||||||||| |||| | ||| || |||||||| |||||| Sbjct 860 ACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128310243190090