Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq5240 973 0.0 seq10087 751 0.0 seq13611 381 2e-101 seq8220 136 1e-27 >seq5240 Length=752 Score = 973 bits (1078), Expect = 0.0 Identities = 579/604 (96%), Gaps = 1/604 (0%) Strand=Plus/Minus Query 3628 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 3687 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 604 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 545 Query 3688 CTGTTTACTGATAAGCTCCAGCTCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 3747 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 544 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 485 Query 3748 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 3807 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 484 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 425 Query 3808 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 3867 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 424 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 365 Query 3868 TGATGCTGAATCAATGATATCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 3927 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 364 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 305 Query 3928 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 3987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 245 Query 3988 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATACCGATTGCCAGACTTAAGTGAGTC 4047 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 244 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 185 Query 4048 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 4107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 125 Query 4108 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTT-TTTTGATTTCAGAATTAGCCTG 4166 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 124 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 65 Query 4167 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 4226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5 Query 4227 GCAA 4230 |||| Sbjct 4 GCAA 1 Score = 134 bits (148), Expect = 5e-27 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 3348 CCAACCGTAAGCGCAATCTCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 3407 || || || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 3408 CTTTCCTGTTCATCCAGCAGTGCCAGCAC 3436 |||||| |||||||||||||| ||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 >seq10087 Length=869 Score = 751 bits (832), Expect = 0.0 Identities = 523/610 (86%), Gaps = 40/610 (7%) Strand=Plus/Minus Query 11623 TCACAAAGAAAAAATCCCCGGTGGCCGCCGGGGACTCTAAGCAAATTGATATGCAATTCT 11682 |||| || |||||| ||||| ||| ||| | ||| | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 11683 GAGGGAATTACTGGATCAATCCACAGGAGTCATTATGACAAATACAGCAAAAATACTCAA 11742 |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAATACAGCAAAAATACTCAA 452 Query 11743 CTTCGGCAGAGGTAACTTTGCCGAACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTA 11802 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 451 CTTCGGCAGAGGTAACTTTGCCGGACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTA 392 Query 11803 CGCCAGACTATCAAATATGCTGATTGAGGCTTATTCAGGCGCAGATCTGACCAAGCGACA 11862 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 391 CGCCAGACTATCAAATATGCTGCTTGAGGCTTATTCGGGCGCAGATCTGACCAAGCGACA 332 Query 11863 GTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAG 11922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 GTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAAACCAATGGACAG 272 Query 11923 AATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGTCAAACGGTGCAATGAAGC 11982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 AATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGTCAAACGGTGCAATGAAGC 212 Query 11983 CAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAA 12042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 CAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAA 152 Query 12043 TAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAGGTTCCCCTAAAATGAGGGN 12102 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 151 TAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAAATCCCCTAAAACGAGGG- 93 Query 12103 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAACATCCCTCAAATTAGG 12162 |||||||||||||||||| || Sbjct 92 --------------------------------------ATAAAACATCCCTCAAATTGGG 71 Query 12163 GGATTGCTNNNNNNNNNNNNNNNNGGACACAAAAGACACTATTACaaaag-aaaaaagaa 12221 |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 70 GGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAAAGAAAAAAAGAA 11 Query 12222 aaGATTATTC 12231 |||||||||| Sbjct 10 AAGATTATTC 1 >seq13611 Length=919 Score = 381 bits (422), Expect = 2e-101 Identities = 300/357 (84%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 25924 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 25983 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 566 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 625 Query 25984 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 26043 ||| | | |||||| || | ||||||||||||||| |||| |||||||||||||||||| Sbjct 626 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCG 685 Query 26044 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 26103 ||||||||||||||| ||| ||||||||| ||||| | |||||||||||| |||||||| Sbjct 686 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGT 745 Query 26104 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGCATCAACGCCACCTGCTCCGGTACCGTG 26163 | ||||||||||||||||||| || ||| |||||| || ||| || | | ||| Sbjct 746 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG-TCAG--TCAGTG 802 Query 26164 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 26223 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 803 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 862 Query 26224 GCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTG 26280 ||||||||||||||||||| ||||||||| || |||| || ||||| || || ||| Sbjct 863 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 919 >seq8220 Length=837 Score = 136 bits (150), Expect = 1e-27 Identities = 180/248 (73%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 46400 CGTATCGCGATGATAAATCCGGAGAGCGGCAACAGCACGCCGTTATTTGTGGCGCAGGGG 46459 |||||||| | || | |||| | ||| || |||||| | |||||||||||||| Sbjct 325 CGTATCGCATTTATTGACCCGGCAAACGGGAATGAAACGCCGATGTTTGTGGCGCAGGGC 266 Query 46460 AATCAGCTGTTCATGAACGACGTGTTCCTGAAGCGACTGTTTGCGGTGAGTATCACGTCA 46519 || ||| | |||||||||||||||||||||||||| ||| || | || || || Sbjct 265 AACCAGATATTCATGAACGACGTGTTCCTGAAGCGCCTGACGGCCCCCACCATTAC--CA 208 Query 46520 TC--CGGCAACCCCCCGACGTTTTCCCTGACGCCGGAAGGGAAGCTGACAGCCAGGAACG 46577 | |||||| || ||| | ||||||||||| ||||| || |||||||| || | || | Sbjct 207 GCGGCGGCAATCCTCCGGCCTTTTCCCTGACACCGGACGGAAAGCTGACCGCTAAAAATG 148 Query 46578 CGGATATCAGCGGAGCAATTACCGCGAATACCGGCACGCTCAATAATGTCACCATTAACG 46637 |||||||||| || | | ||||| |||| ||||||| |||||| || || | Sbjct 147 CGGATATCAGTGGCAGTGTGAATGCGAACTCCGGGACGCTCAGTAATGTGACGATAGCTG 88 Query 46638 AGAACTGT 46645 | |||||| Sbjct 87 AAAACTGT 80 Score = 113 bits (124), Expect = 2e-20 Identities = 181/255 (71%), Gaps = 10/255 (4%) Strand=Plus/Minus Query 45812 CCGCGTCTTGCGGTGTATGACCCGACGGTACAGTTTGAGTTCTGGTTTTCGGAGACAAAA 45871 |||| |||||| || |||||||||||||||||||||||||||||||| ||||| | | Sbjct 829 CCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGGAAAAGCAG 770 Query 45872 ATCGCAGACATATCTCAGGTGGAAACCTCTGCCCGTTATCTGGGGACCG-GCAGTCAGTG 45930 || || || || ||||| |||||| | |||||||| || || | || || | || Sbjct 769 ATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGCTGT-ACTG 711 Query 45931 GAGTGTATCCGGCCCG----CACATTAAGCCCGGGAAGGATTTCTGGTTTTACGTGCGCA 45986 || || || ||| | | || || || || | |||| | ||||| | |||| Sbjct 710 GA---TAGCC-GCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCCGCA 655 Query 45987 GCGTCAACCTGGTGGGGAAATCTGCGTTTGTGGAAGCCAGTGGCCGGGCCAGCAATGATG 46046 | || ||| || || ||||| || || ||||| ||| || ||||| ||| |||||| Sbjct 654 GTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATGATG 595 Query 46047 CAGAAGGGTATCTGG 46061 | ||||| || |||| Sbjct 594 CGGAAGGTTACCTGG 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185189514067480