Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq5240 1005 0.0 seq13611 412 1e-110 seq10087 89.7 2e-13 >seq5240 Length=752 Score = 1005 bits (1114), Expect = 0.0 Identities = 586/604 (97%), Gaps = 1/604 (0%) Strand=Plus/Minus Query 36716 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 36775 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 604 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 545 Query 36776 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 36835 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 485 Query 36836 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 36895 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 484 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 425 Query 36896 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 36955 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 424 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 365 Query 36956 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 37015 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 364 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 305 Query 37016 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 37075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 245 Query 37076 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 37135 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 244 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 185 Query 37136 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 37195 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 125 Query 37196 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTT-TTTTGATTTCAGAATTAGCCTG 37254 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 124 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 65 Query 37255 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 37314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5 Query 37315 GCAA 37318 |||| Sbjct 4 GCAA 1 Score = 143 bits (158), Expect = 1e-29 Identities = 85/89 (96%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 29858 CCAACCGTAAGCGCAATCTCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 29917 || || || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 29918 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 29946 ||||||||||||||||||||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 Score = 138 bits (152), Expect = 4e-28 Identities = 175/238 (74%), Gaps = 17/238 (7%) Strand=Plus/Minus Query 30453 TCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAAGC 30512 ||||||| |||||||||||| |||||||||| | ||||| ||||||||| || |||| Sbjct 559 TCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGT 500 Query 30513 TCTGCATCCACGAACAGCCAGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAACA 30572 | || || |||| ||||||||| || ||||||||||||||||||||||| ||||| Sbjct 499 CCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACA 440 Query 30573 ATGAGTAGCAGATGGGGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGA 30624 |||||| |||||| || | | | ||| |||| || |||| | | Sbjct 439 ATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG----- 388 Query 30625 TTGCGCTGCAATTCTTCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 30681 |||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 387 TTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 330 Score = 134 bits (148), Expect = 5e-27 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 36436 CCAACCGTAAGCGCAATCTCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 36495 || || || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 36496 CTTTCCTGTTCATCCAGCAGTGCCAGCAC 36524 |||||| |||||||||||||| ||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 >seq13611 Length=919 Score = 412 bits (456), Expect = 1e-110 Identities = 307/357 (86%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 57499 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 57558 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 566 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 625 Query 57559 CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCG 57618 ||| | | |||||| || | ||||||||||||||| |||| |||||||||||||||||| Sbjct 626 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCG 685 Query 57619 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 57678 ||||||||||||||| ||| ||||||||| ||||| | |||||||||||| |||||||| Sbjct 686 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGT 745 Query 57679 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACCGTG 57738 | ||||||||||||||||||| || ||| ||||| || ||| || | | ||| Sbjct 746 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG-TCAG--TCAGTG 802 Query 57739 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 57798 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 803 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 862 Query 57799 GCTGAACGGGATTATTTCATCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 57855 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 863 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 919 >seq10087 Length=869 Score = 89.7 bits (98), Expect = 2e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 44152 TCACAAAGAAAAAATCCCCGGCCGCCACCGAGGATTTTAAGCAAATTGATATGCAATTCT 44211 |||| || |||||| |||||| || |||||| || | | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 44212 GAGGGAATTACTGGATCAATCCACAGGAGTAATTATGACAAA 44253 |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191382544179320