Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq13611 980 0.0 seq10087 125 2e-24 >seq13611 Length=919 Score = 980 bits (1086), Expect = 0.0 Identities = 678/767 (88%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 36747 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 36806 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 36807 ATATGCTGGCGTGGTCAGAGGGGACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 36866 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 36867 ATGACGTCATTGTTGGCGGAGAGCTATTCACTGATTACTCCGATCACCCTCGCAAACTTG 36926 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 36927 TCACGCTAAACCCAAAACTCGAATCAACAGCAGCCGGACGTTACCAGCTTCTTTCCCGTT 36986 |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 36987 GGTGGGATGCCTATCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGCCAGGACG 37046 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 37047 CCGTGGCACTGCAACAGATTAAAGAACGTGGCGCTTTACCGATGATTGATCGCGGTGATA 37106 | |||||| |||| |||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 37107 TTCGTCAGGCAATTGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 37166 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 37167 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTACAAAATTTAAAGAAGCAGGCGGAACGG 37226 |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 37227 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCAT 37286 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 37287 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGA 37346 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 37347 GCAGCGCGATAAA---GCCACA----TCCATC--------------ATCGCTGATATGCA 37385 |||||||| ||| |||| | | | | || |||| ||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 37386 GAAGCGGCAACATGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGC 37445 || ||| || | |||||| || | || || || | |||||| |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 37446 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37491 ||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 125 bits (138), Expect = 2e-24 Identities = 69/69 (100%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 27473 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 27532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 ACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATAC 810 Query 27533 TTACATATG 27541 ||||||||| Sbjct 809 TTACATATG 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124772282805950