Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq614 84.2 1e-11 seq590 84.2 1e-11 >seq614 Length=348591 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 25427 CGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGG 25486 ||| || ||||||| ||| ||||||||||| || || ||||| || ||||||||||| Sbjct 130232 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 130291 Query 25487 TTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAA 25546 ||||| || | | || || | | || | ||| |||| ||| ||||| || Sbjct 130292 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 130351 Query 25547 GGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGT 25606 || || || | ||||||| | | || | |||||||||| || || || || | | Sbjct 130352 TGGGACGCCAAGGCCCATGT-CACATGAGCGCTGGTAGAGCATGCAAGAAAGTTCCCCAT 130410 Query 25607 CGCTCACGTAAAACTG 25622 ||||||||||||||| Sbjct 130411 TGCTCACGTAAAACTG 130426 >seq590 Length=263001 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 25427 CGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGG 25486 ||| || ||||||| ||| ||||||||||| || || ||||| || ||||||||||| Sbjct 236156 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 236097 Query 25487 TTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAA 25546 ||||| || | | || || | | || | ||| |||| ||| ||||| || Sbjct 236096 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 236037 Query 25547 GGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGT 25606 || || || | ||||||| | | || | |||||||||| || || || || | | Sbjct 236036 CGGGACGCCAAGGCCCATGT-CACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCAT 235978 Query 25607 CGCTCACGTAAAACTG 25622 ||||||||||||||| Sbjct 235977 TGCTCACGTAAAACTG 235962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340015330630635