Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq13611 277 5e-70 seq5240 149 2e-31 >seq13611 Length=919 Score = 277 bits (306), Expect = 5e-70 Identities = 210/248 (85%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 21936 ATGAGCAGATTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 21995 ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 556 Query 21996 TGGGCTGTTAATCATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTT 22055 ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| | Sbjct 557 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 616 Query 22056 ACTCAAAAGCTGGCGCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGAT 22115 | | | ||| ||||||||||||| ||||||| || ||||| | ||| ||||||||| Sbjct 617 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAT 676 Query 22116 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAAAGCTGAGAATGAT 22175 || || | || || || | |||||| |||||| | |||||||| |||||||| |||||| Sbjct 677 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGAT 736 Query 22176 GCTCTTCG 22183 ||||| || Sbjct 737 GCTCTGCG 744 >seq5240 Length=752 Score = 149 bits (164), Expect = 2e-31 Identities = 87/90 (97%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 5580 CCTACCGTAAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 5639 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 5640 CTTTCCCGTTCATCCAGCAGTGCCAGCACA 5669 ||||||||||||||||||||| |||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCACA 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132283251144070