Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq516 86.0 6e-12 seq29444 84.2 2e-11 >seq516 Length=139422 Score = 86.0 bits (94), Expect = 6e-12 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 ||| || || | || |||| ||| | ||||| || || ||||| || | ||| || || Sbjct 137594 CACACCGCCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 137653 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||||||||||| || || ||||||| | | ||||| || || Sbjct 137654 TGCAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGG 137713 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-- 94954 ||||| || || ||||| | || || ||||| ||| | | ||||| || ||| Sbjct 137714 TGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GC-TGGAT 137771 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 || || |||| || || || || || || || || |||||||||||||||||| || || Sbjct 137772 TCCACCTCAAGCGCAATCGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATGGTTTCA 137831 >seq29444 Length=14792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | ||||| || |||||||| || | ||| || || | ||| | Sbjct 993 CGCAGCACAAGGTGCAGCGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGCGTGCGGCCG 1052 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | | ||||| || || ||||| ||||| ||| Sbjct 1053 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGAATGCCTTCCTTG 1112 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| | | ||||| || ||| || || || | || | Sbjct 1113 TCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GC-TGGATTCCACCTCGAGCGCAA 1170 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || || || ||||| ||||||||||||| Sbjct 1171 TCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATGC 1209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448125920638200