Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq10087 571 2e-158 seq13611 327 3e-85 seq5240 87.8 5e-13 >seq10087 Length=869 Score = 571 bits (632), Expect = 2e-158 Identities = 372/419 (89%), Gaps = 1/419 (0%) Strand=Plus/Minus Query 37704 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 37763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 365 Query 37764 AGCTTATTCAGGCGCAGATCTGACCAAGCGACATTTTAAAGTGCTGCTTGCCATTCTGCG 37823 |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 364 GGCTTATTCGGGCGCAGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCG 305 Query 37824 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACAGATTCTCAACTTAGCGAGAT 37883 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 304 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 245 Query 37884 TACAAAGTTACCCGTCAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATAT 37943 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 TACAAAGTTACCTGTCAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATAT 185 Query 37944 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATATCAGAATGGCGTATCCC 38003 |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 184 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCC 125 Query 38004 TCAAAATGAGGGAAAANNNNNNNNNNNNNNNNNTAAAACANNNNNNNNNNNNNNNNAGTG 38063 |||||| ||||||||| ||||||| | || Sbjct 124 TCAAAACGAGGGAAAATCCCCTAAAACGAGGGATAAAACATCCCTCAAATTGGGGGATTG 65 Query 38064 CTATCCCTCAAAACAGGGGGACACAAAAGACACTATT-CAAAAGAAAGAAATACAAGAT 38121 ||||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||||| Sbjct 64 CTATCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAAAGAAAAAAAGAAAAGAT 6 >seq13611 Length=919 Score = 327 bits (362), Expect = 3e-85 Identities = 308/396 (78%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 45141 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATCG 45200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 590 Query 45201 CCTACAAAGAGCAGCGCGATACCGTTACTCATA-AGCTGACGCTGGCGAACGCGACAATT 45259 ||||||||| |||||||| | | | || | | |||| ||||||||||||| ||||| Sbjct 591 CCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACTGAAGCTGGCGAACGCGGCAATT 649 Query 45260 ACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTCGATGCAAGATATATAAAGGAA 45319 || |||||| || |||||||||||||||||| | |||||||||| ||| | ||||| Sbjct 650 ACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAG 709 Query 45320 TTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGTCNNNNNNNNNNNNNNN 45379 ||||| ||||| |||||||| ||||||||| |||| |||||||| Sbjct 710 TTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGT 769 Query 45380 NNCCTGCTCGTCAACGCCACCTGTCCCGCAATGCCAACAGGTAAATCCACCTCCGCCGCC 45439 ||| | |||| || ||||| || ||| || || ||||| ||||| || Sbjct 770 CGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGC------GTGAAGCCACCACCGCCTCC 823 Query 45440 AGCGTGGATAATGCATCCCGCCCCAGACTGGCAGACTCCGCTCAACGGGATTATTTCACC 45499 |||||||||||||| || |||| ||||||||||| ||||| ||||||||||||||||| Sbjct 824 GGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACC 883 Query 45500 CTCAAAGAGCGAGTGACAACAATGCAAAAGCAACTG 45535 |||| |||| | ||| || |||||||| |||||| Sbjct 884 CTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 919 >seq5240 Length=752 Score = 87.8 bits (96), Expect = 5e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 30098 CCAACCGTAAGCGCAATATCCTCGTTCTCCTGGTCGCGGAGTTTGATGTATTGCTGTTTT 30157 || || || |||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 30158 TTATCC 30163 | ||| Sbjct 692 CTTTCC 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149905876601780