Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq516 136 5e-27 seq278 131 2e-25 seq12641 127 3e-24 seq594 100 4e-16 >seq516 Length=139422 Score = 136 bits (150), Expect = 5e-27 Identities = 270/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || || Sbjct 84332 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCG 84391 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33473 |||||||| || ||||| || || |||||||||| ||| | || || ||| | ||| Sbjct 84392 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGCT 84450 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 84451 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 84510 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33591 ||| | || | || || || | ||||| | | || ||||| | ||| | || Sbjct 84511 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAACACCGA 84570 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 84571 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 84628 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || | | ||||||||| || || || | ||||| || || ||| ||||| ||| Sbjct 84629 TCCGGTACCTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCA 84688 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || || ||||| ||||||| || || || ||||| Sbjct 84689 CTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 84723 >seq278 Length=37984 Score = 131 bits (144), Expect = 2e-25 Identities = 352/531 (66%), Gaps = 8/531 (2%) Strand=Plus/Plus Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || || Sbjct 23925 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 23984 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33473 |||||||| || ||||| || || |||||||||| ||| | ||| || ||| | ||| Sbjct 23985 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGCT 24043 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 24044 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 24103 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33591 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 24104 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 24163 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 24164 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 24221 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || | | ||||||||| || || || | |||| || || ||| ||||| ||| Sbjct 24222 TCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCA 24281 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 || || ||||| ||||| | || || || ||||| | || || || | | || Sbjct 24282 CTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTC 24341 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC-CTC 33830 | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| ||| Sbjct 24342 TCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTCTC 24400 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAAC 33881 || | || ||| | |||||||| |||| ||| | ||| || || || || Sbjct 24401 GGCTTCCTTGTACTTCTTCCAGATATCATGATACTTGATCGGAAAGATCAC 24451 >seq12641 Length=906 Score = 127 bits (140), Expect = 3e-24 Identities = 268/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || |||||||| || |||||||| || ||||| || | | | ||| || || Sbjct 491 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCG 432 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33473 |||||||| || ||||| || || |||||||||| ||| | ||| || ||| | ||| Sbjct 431 GAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGCT 373 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | | |||||| ||||| | |||||| || | | || || || || || Sbjct 372 GCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAAT 313 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA--GA 33591 ||| | || | || || || | ||||| | | || ||||| | || | || Sbjct 312 GGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGA 253 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||| |||||||||||| ||| |||||||| ||||| || |||||||| || | || Sbjct 252 GTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 195 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || | | ||||||||| || || || | |||| || || ||| ||||| ||| Sbjct 194 TCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCA 135 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || || ||||| ||||| | || || || ||||| Sbjct 134 CTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAA 100 >seq594 Length=267672 Score = 100 bits (110), Expect = 4e-16 Identities = 293/450 (65%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||||| || ||||| || | |||||| || | ||| || || |||||||||||||| Sbjct 92919 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGCTCCATGAATAGGTCAGGAATCCAAAG 92978 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 92979 AGCGTAAAACAAATCTCGCGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 93038 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 93039 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGCTT 93098 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 | || |||||||||| || | || |||||||| |||| | | ||| || | || Sbjct 93099 GCCACCCCCCTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 93158 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC---ACTGGCACGAATATTACT 63484 |||||||| ||||| || || | || ||||| || || | || ||||| Sbjct 93159 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 93215 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 | | || || || || || |||| || | |||||| | || || || || Sbjct 93216 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 93275 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||| || ||||| || || || || |||| || |||||||| | |||||| | Sbjct 93276 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 93335 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGG 63634 | | ||||| ||||| ||||| || || Sbjct 93336 AAAAGGCGTTCCGGCATTGAATAATGTCGG 93365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622717527154200