Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq516 122 2e-22 seq12641 109 1e-18 seq278 109 1e-18 seq481 89.7 1e-12 seq602 86.0 2e-11 >seq516 Length=139422 Score = 122 bits (134), Expect = 2e-22 Identities = 313/474 (66%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 22478 GTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAG 22537 |||| || || ||||| ||| |||| ||||| | ||| ||||| ||||||||||| || Sbjct 84446 GTTCGTTTGCCGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCT 84387 Query 22538 CATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAA 22597 | || ||||| |||| |||||||| || |||| | ||||| || || ||||| | Sbjct 84386 CCTTCTGTGCGCTCTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTA 84327 Query 22598 ATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGA 22657 |||| | || || ||||| || | || || || |||||||| || | || || | Sbjct 84326 ATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTA-CGAA 84268 Query 22658 ATC-ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT 22716 | | | || | | || | ||| | || | | | || |||||| | ||| || Sbjct 84267 AACTACATTGTGAACAAGTTACCAAAGGAGCGTATTCGCGAGATTATTTGCAGTGCGGTG 84208 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 || |||| ||| ||||| || || || | || || | || | || || || || Sbjct 84207 GATATTGAGCGTGAGTTTATCTGTGACGCCATCCCTGTGCGGCTGCTGGGGATGAACGCA 84148 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 || | ||| || || || | ||||| || ||||| || | | |||| || | Sbjct 84147 GATTTGATGTCGACGTACATCGAGTTTGTGGCGGATCGGCTGCTGGTGGCACTTGGCAAC 84088 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 | | || || ||| || ||||| || | |||||| | || ||||| | ||| Sbjct 84087 GAACGTCACTACAACTCAAAGAACCCATTCGACTTTATGGAAATGATCTCACTGCAGGGA 84028 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||| || ||||| || || | || ||||| |||||||| || ||||| ||| Sbjct 84027 AAGACAAACTTCTTTGAGAAGAAGGTCGGTGAGTACCAAAAGGCGGGTGTAATG 83974 >seq12641 Length=906 Score = 109 bits (120), Expect = 1e-18 Identities = 310/474 (65%), Gaps = 2/474 (0%) Strand=Plus/Plus Query 22478 GTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAG 22537 |||| || || ||||| ||| |||| ||||| | ||| ||||| ||||||||||| || Sbjct 377 GTTCGTTTGCAGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCT 436 Query 22538 CATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAA 22597 | || ||||| | || |||||||| || |||| | ||||| || || ||||| | Sbjct 437 CCTTCTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTA 496 Query 22598 ATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGA 22657 |||| | || || ||||| || | || || || |||||||| || | || || | Sbjct 497 ATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTA-CGAA 555 Query 22658 ATC-ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT 22716 | | | || | | || || ||| || | | | || |||||| | ||| || Sbjct 556 AACTACATTGTGAACAAGCTACCAACGGAGCGTATTCGCGAGATTATTTGCAGTGCGGTG 615 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 || |||| ||| || || || || | | || || | || | || || || || Sbjct 616 GACATTGAGCGTGAGTTCATCTGTGACTCCATCCCTGTGCGGCTGCTGGGGATGAACGCA 675 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 || | ||| || || || | ||||| || ||||| || | | |||| || | Sbjct 676 GATTTGATGTCGACGTACATCGAGTTTGTGGCGGATCGGCTGCTGGTGGCACTTGGCAAC 735 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 | || || ||| || ||||| || | |||||| | |||||||| | ||| Sbjct 736 GAGCGTCACTACAACTCAAAGAACCCATTCGACTTTATGGAAATGATTTCACTGCAGGGA 795 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||| || ||||| || || | || ||||| |||||||| || ||||| ||| Sbjct 796 AAGACAAACTTCTTTGAGAAGAAGGTCGGTGAGTACCAAAAGGCGGGTGTAATG 849 >seq278 Length=37984 Score = 109 bits (120), Expect = 1e-18 Identities = 310/474 (65%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 22478 GTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAG 22537 |||| || || ||||| ||| |||| ||||| | ||| ||||| ||||||||||| || Sbjct 24039 GTTCGTTTGCAGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCT 23980 Query 22538 CATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAA 22597 | || ||||| | || |||||||| || |||| | ||||| || || ||||| | Sbjct 23979 CCTTCTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTA 23920 Query 22598 ATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGA 22657 |||| | || || ||||| || | || || || |||||||| || | || || | Sbjct 23919 ATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTA-CGAA 23861 Query 22658 ATC-ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT 22716 | | | || | | || || ||| || | | | || |||||| | ||| || Sbjct 23860 AACTACATTGTGAACAAGCTACCAACGGAGCGTATTCGCGAGATTATTTGCAGTGCGGTG 23801 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 || |||| ||| || || || || | | || || | || | || || || || Sbjct 23800 GACATTGAGCGTGAGTTCATCTGTGACTCCATCCCTGTGCGGCTGCTGGGGATGAACGCA 23741 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 || | ||| || || || | ||||| || ||||| || | | |||| || | Sbjct 23740 GATTTGATGTCGACGTACATCGAGTTTGTGGCGGATCGGCTGCTGGTGGCACTTGGCAAC 23681 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 | || || ||| || ||||| || | |||||| | |||||||| | ||| Sbjct 23680 GAGCGTCACTACAACTCAAAGAACCCATTCGACTTTATGGAAATGATTTCACTGCAGGGA 23621 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||| || ||||| || || | || ||||| |||||||| || ||||| ||| Sbjct 23620 AAGACAAACTTCTTTGAGAAGAAGGTCGGTGAGTACCAAAAGGCGGGTGTAATG 23567 >seq481 Length=120291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78552 AATAAAGATACATCAGTGAATGAACAAAATAATTCATAGTTGCGAACCAGATACCACTAC 78611 |||||| ||||| | ||||| || | ||||||||||| || ||||| | |||||| Sbjct 42081 AATAAAAGTACATGATGGAATGTACGCAGTAATTCATAGTCGCAAACCACAGTCCACTAG 42140 Query 78612 CAATGCAAACGGAATATGCATGCCAACAATAAAGAAGAACCGTTAGATGATGATACCAAT 78671 |||| | ||||||||||||||| | || | ||||| |||||||||||||| Sbjct 42141 AAATGGTGTATGCGTATGCATGCCAACAAAACAGCATCACCGTGGCATGATGATACCAAT 42200 Query 78672 GAAGGAAAATTACTGGATTCTTACGAATCAGGAGAAAGAATGTATCTACAAGTTCAACAA 78731 | | || || ||||| ||||| ||| | ||||||| || || | | || || Sbjct 42201 GTAAAAAGATCACTGGTTTCTTCTGAAAAACAAGAAAGACCGTGTCGATCATCTCTGGAA 42260 Query 78732 TCTTGGAATAAATAAAG 78748 |||| ||| || |||| Sbjct 42261 TCTTAGAAAGAACAAAG 42277 >seq602 Length=283566 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78552 AATAAAGATACATCAGTGAATGAACAAAATAATTCATAGTTGCGAACCAGATACCACTAC 78611 |||||| ||||| | ||||| || | ||||||||||| || ||||| | |||||| Sbjct 171100 AATAAAAGTACATGATGGAATGTACGCAGTAATTCATAGTCGCAAACCACAGTCCACTAG 171159 Query 78612 CAATGCAAACGGAATATGCATGCCAACAATAAAGAAGAACCGTTAGATGATGATACCAAT 78671 ||| | | ||||||||||||||| | || | || || |||||||||||||| Sbjct 171160 AGATGGTATACGCGTATGCATGCCAACAAAACAGCATCACAGTGGCATGATGATACCAAT 171219 Query 78672 GAAGGAAAATTACTGGATTCTTACGAATCAGGAGAAAGAATGTATCTACAAGTTCAACAA 78731 | | || || ||||| ||||| ||| | ||||||| || || | | || || Sbjct 171220 GTAAAAAGATCACTGGTTTCTTCTGAAAGACAAGAAAGACCGTGTCGATCATCTCTGGAA 171279 Query 78732 TCTTGGAATAAATAAAG 78748 |||| ||| || |||| Sbjct 171280 TCTTAGAAAGAACAAAG 171296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302861056565090