Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq516 96.9 3e-15 seq12641 91.5 1e-13 seq278 91.5 1e-13 >seq516 Length=139422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 229/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 104608 TTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTC 104667 || ||||| || || ||||| |||| ||| || || | | |||||| ||||| || ||| Sbjct 84008 TTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATAAAGTCGAATGGGTTC 84067 Query 104668 AAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCG 104727 | || | | ||||| |||||| | | || ||| |||||||||||||| ||| Sbjct 84068 TTTGAGTTGTAGTGACGTTCGTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCG 84127 Query 104728 ATGTAC-TCGCACATAGAATGTGCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGT 104786 |||||| ||| |||| ||| ||| ||||| ||||||| || || | |||| | Sbjct 84128 ATGTACGTCG-ACATCAAATCTGCGTTCATCCCCAGCAGCCGCACAGGGATGGCGTCACA 84186 Query 104787 aaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTTC---AGCACCTTGCTTTC 104843 | ||| || ||| || ||||| || | ||| | || | || | |||| Sbjct 84187 GATAAACTCACGCTCAATATCCACCGC-ACTGCAAATAATCTCGCGAATACGCTCCTTT- 84244 Query 104844 AGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATAGAGGCAGGCAAAGTCTGTGTG 104903 | | |||| || |||| || || | ||| | ||||| |||||||| ||||| Sbjct 84245 -GGTAACTTG------TTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTCCGTGTG 84297 Query 104904 CAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCA 104944 ||| |||||||| | || || ||||| || ||| | |||| Sbjct 84298 CAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCA 84338 >seq12641 Length=906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 228/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 104608 TTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTC 104667 || ||||| || || ||||| |||| ||| ||||| | | |||||| ||||| || ||| Sbjct 815 TTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAAATCATTTCCATAAAGTCGAATGGGTTC 756 Query 104668 AAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCG 104727 | || | | |||| |||||| | | || ||| |||||||||||||| ||| Sbjct 755 TTTGAGTTGTAGTGACGCTCGTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCG 696 Query 104728 ATGTAC-TCGCACATAGAATGTGCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGT 104786 |||||| ||| |||| ||| ||| ||||| ||||||| || || | | || | Sbjct 695 ATGTACGTCG-ACATCAAATCTGCGTTCATCCCCAGCAGCCGCACAGGGATGGAGTCACA 637 Query 104787 aaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTTC---AGCACCTTGCTTTC 104843 | || || ||| |||||||| || | ||| | || | || | | || Sbjct 636 GATGAACTCACGCTCAATGTCCACCGC-ACTGCAAATAATCTCGCGAATACGCTCCGTT- 579 Query 104844 AGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATAGAGGCAGGCAAAGTCTGTGTG 104903 | |||||| || |||| || || | ||| | ||||| |||||||| ||||| Sbjct 578 -GGTAGCTTG------TTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTCCGTGTG 526 Query 104904 CAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCA 104944 ||| |||||||| | || || ||||| || ||| | |||| Sbjct 525 CAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCA 485 >seq278 Length=37984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 228/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 104608 TTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTC 104667 || ||||| || || ||||| |||| ||| ||||| | | |||||| ||||| || ||| Sbjct 23601 TTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAAATCATTTCCATAAAGTCGAATGGGTTC 23660 Query 104668 AAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCG 104727 | || | | |||| |||||| | | || ||| |||||||||||||| ||| Sbjct 23661 TTTGAGTTGTAGTGACGCTCGTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCG 23720 Query 104728 ATGTAC-TCGCACATAGAATGTGCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGT 104786 |||||| ||| |||| ||| ||| ||||| ||||||| || || | | || | Sbjct 23721 ATGTACGTCG-ACATCAAATCTGCGTTCATCCCCAGCAGCCGCACAGGGATGGAGTCACA 23779 Query 104787 aaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTTC---AGCACCTTGCTTTC 104843 | || || ||| |||||||| || | ||| | || | || | | || Sbjct 23780 GATGAACTCACGCTCAATGTCCACCGC-ACTGCAAATAATCTCGCGAATACGCTCCGTT- 23837 Query 104844 AGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATAGAGGCAGGCAAAGTCTGTGTG 104903 | |||||| || |||| || || | ||| | ||||| |||||||| ||||| Sbjct 23838 -GGTAGCTTG------TTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTCCGTGTG 23890 Query 104904 CAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCA 104944 ||| |||||||| | || || ||||| || ||| | |||| Sbjct 23891 CAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCA 23931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429781450771725