Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq278 140 4e-28 seq516 136 5e-27 seq12641 131 2e-25 seq594 109 7e-19 >seq278 Length=37984 Score = 140 bits (154), Expect = 4e-28 Identities = 356/532 (67%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 23925 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 23983 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC 32829 ||||||||||| ||||| || ||||||||||||| ||| | ||| || ||| | || Sbjct 23984 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGC 24042 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 24043 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 24102 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 32947 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 24103 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 24162 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | ||| |||||||||||| ||| |||||||| || || || ||||||||||| | | Sbjct 24163 AGTAT--GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 24220 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 ||| | | ||||||||| || || || | || | || || ||| ||||| || Sbjct 24221 CTCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATC 24280 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 ||| || ||||| ||||| | || || || ||||| | || || || | | || Sbjct 24281 ACTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTT 24340 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC-CT 33186 | ||| || | || | | ||| | ||| ||||| |||| | ||| ||| || Sbjct 24341 CTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGATGCTGCTCT 24399 Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 | || | || ||| | |||||||| |||||||| | || ||||| || || Sbjct 24400 CGGCTTCCTTGTACTTCTTCCAGATATCATGATACTTGATCGGAAAGATCAC 24451 >seq516 Length=139422 Score = 136 bits (150), Expect = 5e-27 Identities = 272/396 (69%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 84332 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCG-CACAGAAGGAGCC 84390 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC 32829 ||||||||||| ||||| || ||||||||||||| ||| | || || ||| | || Sbjct 84391 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCA-AACGAACTGC 84449 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 84450 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 84509 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA--G 32947 | || | || | || || || | ||||| | | || ||||| | ||| | | Sbjct 84510 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAACACCG 84569 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | ||| |||||||||||| ||| |||||||| || || || ||||||||||| | | Sbjct 84570 AGTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 84627 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 ||| | | ||||||||| || || || | || | || || ||| ||||| || Sbjct 84628 CTCCGGTACCTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATC 84687 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 ||| || ||||| ||||||| || || || ||||| Sbjct 84688 ACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAA 84723 >seq12641 Length=906 Score = 131 bits (144), Expect = 2e-25 Identities = 271/396 (68%), Gaps = 8/396 (2%) Strand=Plus/Minus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 ||||| || |||||||| || |||||||| || ||||| || | | | || || || || Sbjct 491 AACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCG-CACAGAAGGAGCC 433 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC 32829 ||||||||||| ||||| || ||||||||||||| ||| | ||| || ||| | || Sbjct 432 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCA-AACGAACTGC 374 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || | |||||| ||||| | |||||| || | | || || |||||| | Sbjct 373 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAA 314 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA--G 32947 | || | || | || || || | ||||| | | || ||||| | || | | Sbjct 313 TGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCG 254 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | ||| |||||||||||| ||| |||||||| || || || ||||||||||| | | Sbjct 253 AGTATG--TTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCAC 196 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 ||| | | ||||||||| || || || | || | || || ||| ||||| || Sbjct 195 CTCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATC 136 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 ||| || ||||| ||||| | || || || ||||| Sbjct 135 ACTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAA 100 >seq594 Length=267672 Score = 109 bits (120), Expect = 7e-19 Identities = 295/450 (66%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||||| || ||||| || | |||||| || | ||| || || |||||||||||||| Sbjct 92919 CATCAGCGTCCACTTGCCTCCGCTCTTCACACGCTCCATGAATAGGTCAGGAATCCAAAG 92978 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 ||| ||| | ||||| | ||||| || || || || ||||| || || | | || Sbjct 92979 AGCGTAAAACAAATCTCGCGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG 93038 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 || | |||||| |||||| || || ||||| ||||| | | || || || Sbjct 93039 AAAATTAAATATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGCTT 93098 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 | || |||||||||| || | || |||||||| |||| | | ||| || | || Sbjct 93099 GCCACCCCCCTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 93158 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC---ACTGGCACGAATATTACT 63339 || || || ||||| ||||| | || ||||| || || | || ||||| Sbjct 93159 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAG---CGGATATTGTG 93215 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 | | || || || || || |||| || | |||||| | || || ||||| Sbjct 93216 CACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATC 93275 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 ||| || ||||| ||||| || ||| |||| || |||||||| | |||||| | Sbjct 93276 ATAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGG 93335 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGG 63489 | | ||||| ||||| ||||| || || Sbjct 93336 AAAAGGCGTTCCGGCATTGAATAATGTCGG 93365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633398387802000