Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq29444 89.7 4e-13 seq19126 86.0 5e-12 >seq29444 Length=14792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | || | |||| ||||| || Sbjct 1207 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCGCTCGAGGTGGAATCCAGC 1148 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| |||||||| ||||| Sbjct 1147 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCACCGGACCAG 1088 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || || | ||||| | | || ||||| Sbjct 1087 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTTGCAGACTACAAC 1028 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||||||||| || | ||||| Sbjct 1027 ATCCAGAAGGAATCCACGCTGCACCTTGTGCT 996 >seq19126 Length=1000 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | || | |||| ||||| || Sbjct 91 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCGCTCGAGGTGGAATCCAGC 150 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| |||||||| ||||| Sbjct 151 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCACCGGACCAG 210 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | ||||| | | || ||||| Sbjct 211 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTTGCAGACTACAAC 270 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||||||||| || | ||||| Sbjct 271 ATCCAGAAGGAATCCACGCTGCACCTTGTGCT 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433172231448425