Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq516 172 6e-38 seq278 168 7e-37 seq12641 149 7e-31 seq535 87.8 2e-12 seq497 87.8 2e-12 >seq516 Length=139422 Score = 172 bits (190), Expect = 6e-38 Identities = 599/918 (65%), Gaps = 30/918 (3%) Strand=Plus/Plus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||| ||||| |||||||| || || || || || |||||||| ||||||||||| | Sbjct 83973 TCATTACACCCGCCTTTTGGTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCT 84032 Query 92849 CCAAAGATATCGAATTCACTA--GT-GATTGGATTCTTGGCGTTATAAT-ACTTTTCACC 92904 || || ||| | ||| || || || ||| ||||| | ||| || | || || | Sbjct 84033 GCAGTGAGATC-ATTTCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGTT----C 84087 Query 92905 GAT--CAACTCGTACAATAATCT-ATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 | | ||| | || | | | ||| || ||||| || |||||| ||||||||||| Sbjct 84088 GTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATC 84147 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC 93021 ||||| || || || || ||||| | ||||| | || || ||| || | Sbjct 84148 TGCGTTCATCCCCAGCAGCCGCACAGGGATGGCGTCACAGATAAACTCACGCTCAATATC 84207 Query 93022 AACGGC--TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAA 93079 || || | | || | | | ||| || || ||||| || | || | || Sbjct 84208 CACCGCACTGCAAATAATCTCGCGAATACGCTCCT--TTGGTAACTTGTTCACAATGTAG 84265 Query 93080 TT---GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 || ||||| | |||||||||||| || || || ||||| || || || || | ||| Sbjct 84266 TTTTCGTACAACAGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCA 84325 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 || ||||| || | || || | ||| || || ||||| ||||| || | | | || || Sbjct 84326 TTACTGAACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCA-CAGAA 84384 Query 93197 CTA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--A 93253 | || ||||| || ||||||||||| || ||||| || |||| ||||||||||| | Sbjct 84385 GGAGCCGGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGA 84444 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 ||| | |||| |||||| | ||||| | ||| ||||||| || || || Sbjct 84445 ACTGC-----TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGA 84499 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | ||| || |||| || | | || ||| |||| |||| ||||| ||||| Sbjct 84500 ATTGTCGAAATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCC 84559 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 | |||| || || |||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 84560 AACAACACCGAGTATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAG 84619 Query 93434 CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 || | | |||| | ||| ||||| || | || | || || || || Sbjct 84620 CAGCGCACCTCCGGTACCTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACA 84679 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT 93553 || ||||| ||| ||||| || |||| | ||||| ||||| ||||| | || Sbjct 84680 ATTCCATCACTTGCGGCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCG 84739 Query 93554 TTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 || | ||| ||||| || | | || | | |||| ||| || || |||| | | Sbjct 84740 TTCATCTTCTCCCAGTCCGCCAAGTCACTGCTCAAGTCGATTTCCTCCACCGTCC-AGAT 84798 Query 93614 GATGCT-TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 | |||| || | || |||||| | | ||| || || || || | || ||||| || || Sbjct 84799 GCTGCTCTCGGATTCCTTGTACTTCTTCCAGATATCGTGGTACTTGATCGGAAAGATCAC 84858 Query 93673 AAAACGATTAGGGTTATC 93690 |||| | ||| || || Sbjct 84859 GTAACGGTCAGGATTCTC 84876 >seq278 Length=37984 Score = 168 bits (186), Expect = 7e-37 Identities = 598/918 (65%), Gaps = 30/918 (3%) Strand=Plus/Plus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||| ||||| |||||||| || || || || || |||||||| ||||||||||| | Sbjct 23566 TCATTACACCCGCCTTTTGGTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCT 23625 Query 92849 CCAAAGATATCGAATTCACTA--GT-GATTGGATTCTTGGCGTTATAAT-ACTTTTCACC 92904 || || ||| | ||| || || || ||| ||||| | ||| || | || | | Sbjct 23626 GCAGTGAAATC-ATTTCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCT----C 23680 Query 92905 GAT--CAACTCGTACAATAATCT-ATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 | | ||| | || | | | ||| || ||||| || |||||| ||||||||||| Sbjct 23681 GTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATC 23740 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC 93021 ||||| || || || || ||||| | | ||| | ||| || ||| || | Sbjct 23741 TGCGTTCATCCCCAGCAGCCGCACAGGGATGGAGTCACAGATGAACTCACGCTCAATGTC 23800 Query 93022 AACGGC--TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAA 93079 || || | | || | | | ||| || | ||||| | || | || | || Sbjct 23801 CACCGCACTGCAAATAATCTCGCGAATACGCTCCG--TTGGTAGCTTGTTCACAATGTAG 23858 Query 93080 TT---GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 || ||||| | |||||||||||| || || || ||||| || || || || | ||| Sbjct 23859 TTTTCGTACAACAGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCA 23918 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 || ||||| || | || || | ||| || || ||||| ||||| || | | | || || Sbjct 23919 TTACTGAACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCA-CAGAA 23977 Query 93197 CTA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--A 93253 | || ||||| || ||||||||||| || ||||| || |||| ||||| ||||| | Sbjct 23978 GGAGCCGGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGA 24037 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 ||| | |||| |||||| | ||||| | ||| ||||||| || || || Sbjct 24038 ACTGC-----TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGA 24092 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | ||| || |||| || | | || ||| |||| |||| ||||| ||||| Sbjct 24093 ATTGTCGAAATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCC 24152 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 | | || || || |||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 24153 AACAGCACCGAGTATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAG 24212 Query 93434 CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 || | | |||| | ||| ||||| || | || | || || || || Sbjct 24213 CAGCGCACCTCCGGTACCTGTACTTCCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACA 24272 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT 93553 || ||||| ||| ||||| || || | | ||||| ||||| ||||| | || Sbjct 24273 ATTCCATCACTTGCGGCAAAGAACGCTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCG 24332 Query 93554 TTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 || | ||| ||||| || | | || | | ||||| ||| || || |||| | | Sbjct 24333 TTCATCTTCTCCCAGTCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCC-AGAT 24391 Query 93614 GATGCT-TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 | |||| || |||| |||||| | | ||| || || ||||| | || ||||| || || Sbjct 24392 GCTGCTCTCGGCTTCCTTGTACTTCTTCCAGATATCATGATACTTGATCGGAAAGATCAC 24451 Query 93673 AAAACGATTAGGGTTATC 93690 |||| | ||| || || Sbjct 24452 GTAACGGTCAGGATTCTC 24469 >seq12641 Length=906 Score = 149 bits (164), Expect = 7e-31 Identities = 453/686 (66%), Gaps = 28/686 (4%) Strand=Plus/Minus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||| ||||| |||||||| || || || || || |||||||| ||||||||||| | Sbjct 850 TCATTACACCCGCCTTTTGGTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCT 791 Query 92849 CCAAAGATATCGAATTCACTA--GT-GATTGGATTCTTGGCGTTATAAT-ACTTTTCACC 92904 || || ||| | ||| || || || ||| ||||| | ||| || | || | | Sbjct 790 GCAGTGAAATC-ATTTCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCT----C 736 Query 92905 GAT--CAACTCGTACAATAATCT-ATCAGCTACAAATTCTATGTACTGAGACATCAAATC 92961 | | ||| | || | | | ||| || ||||| || |||||| ||||||||||| Sbjct 735 GTTGCCAAGTGCCACCAGCAGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATC 676 Query 92962 ACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC 93021 ||||| || || || || ||||| | | ||| | ||| || ||| || | Sbjct 675 TGCGTTCATCCCCAGCAGCCGCACAGGGATGGAGTCACAGATGAACTCACGCTCAATGTC 616 Query 93022 AACGGC--TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAA 93079 || || | | || | | | ||| || | ||||| | || | || | || Sbjct 615 CACCGCACTGCAAATAATCTCGCGAATACGCTCCG--TTGGTAGCTTGTTCACAATGTAG 558 Query 93080 TT---GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 || ||||| | |||||||||||| || || || ||||| || || || || | ||| Sbjct 557 TTTTCGTACAACAGGCACGCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCA 498 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 || ||||| || | || || | ||| || || ||||| ||||| || | | | || || Sbjct 497 TTACTGAACGTCAGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCA-CAGAA 439 Query 93197 CTA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--A 93253 | || ||||| || ||||||||||| || ||||| || |||| ||||| ||||| | Sbjct 438 GGAGCCGGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGA 379 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 ||| | |||| |||||| | ||||| | ||| ||||||| || || || Sbjct 378 ACTGC-----TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGA 324 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | ||| || |||| || | | || ||| |||| |||| ||||| ||||| Sbjct 323 ATTGTCGAAATGGCGTGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCC 264 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 | | || || || |||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 263 AACAGCACCGAGTATGTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAG 204 Query 93434 CATCTAGCTTCCGTGATCTGCACTTC 93459 || | | |||| | ||| ||||| Sbjct 203 CAGCGCACCTCCGGTACCTGTACTTC 178 >seq535 Length=165582 Score = 87.8 bits (96), Expect = 2e-12 Identities = 61/67 (91%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || || ||| |||||||||||| Sbjct 113923 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTCTAGGG-GCGTGGGTTCGA 113866 Query 126333 ACCCCAC 126339 ||||||| Sbjct 113865 ACCCCAC 113859 >seq497 Length=127294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 61/67 (91%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || || ||| |||||||||||| Sbjct 89730 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTCTAGGG-GCGTGGGTTCGA 89673 Query 126333 ACCCCAC 126339 ||||||| Sbjct 89672 ACCCCAC 89666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556655492383800