Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq13611 464 2e-126 seq8220 439 7e-119 >seq13611 Length=919 Score = 464 bits (514), Expect = 2e-126 Identities = 360/426 (85%), Gaps = 3/426 (1%) Strand=Plus/Plus Query 45903 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCG 45962 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 556 Query 45963 TGGGCGGTCAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGTGATAAAAAA 46022 ||||| || ||||||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 557 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 616 Query 46023 GTCAGTGAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGCAGCAGCGTCAGCGTGAT 46082 | ||| || ||||||| ||||| ||| | || ||||||||||| ||||||||||||| Sbjct 617 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAT 676 Query 46083 GTTGCTGCGATCGATGCAAAATACACGAAGGAGTTAGCCGATGCGAAAACTGAAAATGAA 46142 ||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 677 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGAT 736 Query 46143 ACTCTGCGCGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGGTCAATGCCAGTTGCTCC 46202 ||||||| | ||||||||||||||||||| || ||| |||| | |||| || Sbjct 737 GCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAG-CAGTCTGTCA 795 Query 46203 GCAGCCGTGCGTGAAGCCACCGGACCCACCAGCATGGATAATGCAACCAGCCCCCGACTG 46262 | | ||||||||||||||| || || || ||||||||||| || |||||||||| Sbjct 796 G--TCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTG 853 Query 46263 GCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAACGGTTGATGACGATGCAGAAG 46322 |||||||||||||||||||||||||||||||||||||| || |||| || ||||| || Sbjct 854 GCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAA 913 Query 46323 CAACTG 46328 |||||| Sbjct 914 CAACTG 919 >seq8220 Length=837 Score = 439 bits (486), Expect = 7e-119 Identities = 284/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 17332 CCGCCACGCCGCATCTTGCGGTTTATGATCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 17391 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 837 CCGCCACGCCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGG 778 Query 17392 AAAAGCGGATTACCGATATCAGGCAGGTTGAAACCACAGCCCGCTATCTTGGCACGGGGC 17451 |||||| |||| | |||||||| ||||||||||||| | || |||||||| |||| || Sbjct 777 AAAAGCAGATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGC 718 Query 17452 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 17511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TGTACTGGATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCC 658 Query 17512 GCAGTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCTGTCGGTCAGGCGAGCGATG 17571 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 657 GCAGTGTGAACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATG 598 Query 17572 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCGAGATAGGGAAAACCCATCTGGCTCAGG 17631 |||||||||||||||||||||||||||||||| ||||| || ||||||| | ||| Sbjct 597 ATGCGGAAGGTTACCTGGATTTTTTCAAAGGCAAGATAACCGAATCCCATCTCGGCAAGG 538 Query 17632 AGCTG-TGGA 17640 ||||| |||| Sbjct 537 AGCTGCTGGA 528 Score = 334 bits (370), Expect = 2e-87 Identities = 307/388 (79%), Gaps = 0/388 (0%) Strand=Plus/Minus Query 17810 CATGTGGGCAGTGAAGCTGCAGCAGATGCAGGACGGACGCCTTTATATTGCGGGTATCGG 17869 ||||||||| || || | |||||| | ||||| | |||| | |||||||| || Sbjct 443 CATGTGGGCTGTCAAAATTGAGCAGACCAAAGACGGCAAACATTATGTCGCGGGTATTGG 384 Query 17870 GGCCGGTATTGAGAACACCCCTGACGGCATGCAGAGTCAGGTGCTGCTGGCGGCGGACAG 17929 | | || ||| |||| || |||| | ||| ||| | ||| | || || | | Sbjct 383 CCTCAGCATGGAGGACACGGAGGAAGGCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCG 324 Query 17930 GATTGCGATGATTAATCCTGCGAATGGCAACACAAAGCCGATGTTTGTTGGGCAGGGCGA 17989 || || | ||| | || || || || || || |||||||||||| | ||||||| | Sbjct 323 TATCGCATTTATTGACCCGGCAAACGGGAATGAAACGCCGATGTTTGTGGCGCAGGGCAA 264 Query 17990 TCAGATATTCATGAACGACGTGTTCCTGAAACGCCTGACGGCCCCCACCATTACCAGCGG 18049 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 263 CCAGATATTCATGAACGACGTGTTCCTGAAGCGCCTGACGGCCCCCACCATTACCAGCGG 204 Query 18050 TGGAAATCCACCGGCATTTTCCCTGACTCCGGACGGAAAGCTGACCGCTAAAAATGCGGA 18109 || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 203 CGGCAATCCTCCGGCCTTTTCCCTGACACCGGACGGAAAGCTGACCGCTAAAAATGCGGA 144 Query 18110 TATCAGTGGCAGTGTGAATGCGAACGCCGGGACGCTCAACAATGTCACGGTAAATGAAAA 18169 ||||||||||||||||||||||||| |||||||||||| ||||| ||| || |||||| Sbjct 143 TATCAGTGGCAGTGTGAATGCGAACTCCGGGACGCTCAGTAATGTGACGATAGCTGAAAA 84 Query 18170 CTGTACGATTAAGGGCATGCTGGAGGCG 18197 ||||||||| || || | |||| |||| Sbjct 83 CTGTACGATAAACGGTACGCTGAGGGCG 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150292940983770