Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq594 208 9e-49 seq12641 120 4e-22 seq278 120 4e-22 seq516 114 2e-20 >seq594 Length=267672 Score = 208 bits (230), Expect = 9e-49 Identities = 683/1054 (65%), Gaps = 17/1054 (2%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 91752 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 91811 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | |||||| |||||| || || |||| ||||| || || ||||| || Sbjct 91812 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAACTTGCC 91871 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 91872 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 91931 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| | |||| ||| || || |||||||| | |||||| | | | || Sbjct 91932 CTCCTTGAGGTCATTTGGAATGCCCCTAATATTTTGCACCGAGCCATTG---TAGGCAAT 91988 Query 113842 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 || | || ||| || | ||| ||||| ||| |||||||| ||| || | Sbjct 91989 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 92048 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 92049 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 92108 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGTGGGCATGGGTG 114017 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 92109 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 92167 Query 114018 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 114077 ||| || | || || | || ||| | | || || | ||| | || ||||| | Sbjct 92168 CCAACAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 92227 Query 114078 CGTAGTTGAGCTTTGTC---TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGG 114134 | || | || | | | || ||||| ||||||||| || ||||| || | Sbjct 92228 CCCAGCGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 92287 Query 114135 CTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 114194 | || || |||| | | || || ||||| || ||||| | ||| |||||||| Sbjct 92288 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 92347 Query 114195 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 114254 | | || ||| || || || |||||||| |||||| | | | ||||| | | Sbjct 92348 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCTGGC 92407 Query 114255 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 114314 | || | || || || ||||| |||||| | ||||| || || | |||| Sbjct 92408 ATGTGAATGGTAGCCGCATCAGGATAAAAGTATCCGCCATTCCTTGCACGCCAATTCCAA 92467 Query 114315 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 114371 | || |||| | || ||| | ||| ||| || |||||| || | || Sbjct 92468 TGGGACGATTGAGCTCGTTG--CTTCGGCGCGA-CTCGGGTACAGGATAATGGTTACGAT 92524 Query 114372 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 114431 |||| || | ||| |||||||| ||||||| || |||| |||| ||| | || | Sbjct 92525 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGGTGGT 92584 Query 114432 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 114491 | || | | |||| | || ||| | ||||| || || || || || || |||| Sbjct 92585 CGTAAATTCTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 92644 Query 114492 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 114551 | | | ||||||| | || ||||||||||| || || || | || || | ||| | Sbjct 92645 CCGCGACCTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 92704 Query 114552 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 114611 || || | ||||| |||||||| || |||||| || ||||||||||||||| | | Sbjct 92705 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 92764 Query 114612 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 | ||||| ||| | || || | ||| || || Sbjct 92765 GGACGCCCGTTTCCATCTGCGATTCGAGTATGGC 92798 Score = 125 bits (138), Expect = 9e-24 Identities = 287/428 (67%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||| ||||| |||||||| || || | | ||||||| | | ||||| || | | Sbjct 87721 CGTAGGTAATACATACCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTC 87780 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | | | | |||||| |||||| || || |||| ||||| || || ||||| Sbjct 87781 AGTTGGCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAAC 87840 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 ||||| ||| | ||||| || || | ||||||| | || ||||||||| | Sbjct 87841 TTGCCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGA 87900 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTG 113836 || || | ||| | |||| ||| || || || ||||| | |||||| | | Sbjct 87901 TACAGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACCGAGCCATTG---TAG 87957 Query 113837 ACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 | |||| | || ||| || | ||| ||||| ||| |||||||| ||| Sbjct 87958 GCAATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACA 88017 Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 || | ||| || || ||| ||||||||| || || | || |||||||| | Sbjct 88018 AGGTACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAG 88077 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGTGGGCAT 114012 || |||||||||||||||||||||| |||||| || || | ||||| || |||||||| Sbjct 88078 GTAAATGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCAT 88136 Query 114013 GGGTGCCA 114020 || |||| Sbjct 88137 TGGAGCCA 88144 >seq12641 Length=906 Score = 120 bits (132), Expect = 4e-22 Identities = 253/371 (68%), Gaps = 15/371 (4%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || || ||||| |||||||||||||| ||| ||| || Sbjct 539 GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCG 480 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | |||||| | |||||| || || || || ||||| || Sbjct 479 GGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAATA 420 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTCAAA 126225 || ||||| ||| || |||| || || || ||||| || | || | || | Sbjct 419 CCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGC----TGCTGCGGAT 364 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA- 126283 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | || Sbjct 363 CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAA 304 Query 126284 -AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 126342 | | | ||||||| || | |||| |||||||| |||| | || || ||||| Sbjct 303 CATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGT 247 Query 126343 TTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTT 126400 ||| || || | ||| |||||| ||| || ||||||| ||||| | || | Sbjct 246 TTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGT 189 Query 126401 ATCTGTACCTC 126411 | |||||| || Sbjct 188 ACCTGTACTTC 178 >seq278 Length=37984 Score = 120 bits (132), Expect = 4e-22 Identities = 253/371 (68%), Gaps = 15/371 (4%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || || ||||| |||||||||||||| ||| ||| || Sbjct 23877 GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCG 23936 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | |||||| | |||||| || || || || ||||| || Sbjct 23937 GGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAATA 23996 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTCAAA 126225 || ||||| ||| || |||| || || || ||||| || | || | || | Sbjct 23997 CCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGC----TGCTGCGGAT 24052 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA- 126283 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | || Sbjct 24053 CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAA 24112 Query 126284 -AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 126342 | | | ||||||| || | |||| |||||||| |||| | || || ||||| Sbjct 24113 CATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGT 24169 Query 126343 TTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTT 126400 ||| || || | ||| |||||| ||| || ||||||| ||||| | || | Sbjct 24170 TTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGT 24227 Query 126401 ATCTGTACCTC 126411 | |||||| || Sbjct 24228 ACCTGTACTTC 24238 >seq516 Length=139422 Score = 114 bits (126), Expect = 2e-20 Identities = 252/371 (68%), Gaps = 15/371 (4%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || || ||||| |||||||||||||| ||| ||| || Sbjct 84284 GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCG 84343 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | |||||| | |||||| || || || || ||||| || Sbjct 84344 GGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCGGAAAAGAAAATA 84403 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTCAAA 126225 || ||||| ||| || |||| || || || ||||| || | || | || | Sbjct 84404 CCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGC----TGCTGCGGAT 84459 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA- 126283 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | || Sbjct 84460 CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAA 84519 Query 126284 -AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 126342 | | | ||||||| || | |||| |||||||| |||| | | || ||||| Sbjct 84520 CATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAACACCGAGTATGT 84576 Query 126343 TTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTT 126400 ||| || || | ||| |||||| ||| || ||||||| ||||| | || | Sbjct 84577 TTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGT 84634 Query 126401 ATCTGTACCTC 126411 | |||||| || Sbjct 84635 ACCTGTACTTC 84645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597133363194600