Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq5240 973 0.0 seq8220 347 5e-91 seq13611 190 8e-44 seq10087 89.7 2e-13 >seq5240 Length=752 Score = 973 bits (1078), Expect = 0.0 Identities = 579/604 (96%), Gaps = 1/604 (0%) Strand=Plus/Minus Query 4960 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 5019 |||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 604 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 545 Query 5020 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 5079 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 485 Query 5080 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 5139 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 484 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 425 Query 5140 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 5199 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 424 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 365 Query 5200 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5259 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 364 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 305 Query 5260 CTTGAGGGTGAATGCGAACAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5319 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 245 Query 5320 CATGTTCATCGCTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 5379 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 244 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 185 Query 5380 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 5439 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 125 Query 5440 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTT-TTTTGATTTCAGAATTAGCCTG 5498 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 124 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 65 Query 5499 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5 Query 5559 GCAA 5562 |||| Sbjct 4 GCAA 1 Score = 138 bits (152), Expect = 4e-28 Identities = 84/89 (94%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 4680 CCAACCGTAAGCGCAATCCCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 4739 || || || |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 4740 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 4768 ||||||||||||||||||||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 >seq8220 Length=837 Score = 347 bits (384), Expect = 5e-91 Identities = 259/302 (86%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 53973 CCGCGTCTTGCGGTGTATGACCCGACGGTACAGTTTGAGTTCTGGTTTTCGGAAACGCGG 54032 |||| |||||| || |||||||||||||||||||||||||||||||| ||||||| || | Sbjct 829 CCGCATCTTGCCGTTTATGACCCGACGGTACAGTTTGAGTTCTGGTTCTCGGAAAAGCAG 770 Query 54033 ATTACCGATATCAGGCAGGTTGAAACCACAGCCCGCTACCTTGGCACGGGGCTGTACTGG 54092 ||| | |||||||| ||||||||||||| | || || ||||| |||| |||||||||| Sbjct 769 ATTGCGGATATCAGACAGGTTGAAACCAGCACGCGTTATCTTGGTACGGCGCTGTACTGG 710 Query 54093 ATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCCGCAGTGTG 54152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 ATAGCCGCCAGTATCAATATCAAACCGGGCCATGATTATTACTTTTATATCCGCAGTGTG 650 Query 54153 AACACCGTTGGCAAATCGGCATTTGTGGAGGCTGTTGGCCAGCCGAGTGATGATGCATCC 54212 ||||||||||||||||||||||| |||||||| || || | | |||| |||||||| Sbjct 649 AACACCGTTGGCAAATCGGCATTCGTGGAGGCCGTCGGTCGGGCGAGCGATGATGCGGAA 590 Query 54213 GGCTATCTGGATTTTTTCAAAGGAGAGATAGGGAAAACCCATCTGGCTCAGGAGTTG-TG 54271 || || ||||||||||||||||| ||||| || ||||||| | ||||| || || Sbjct 589 GGTTACCTGGATTTTTTCAAAGGCAAGATAACCGAATCCCATCTCGGCAAGGAGCTGCTG 530 Query 54272 GA 54273 || Sbjct 529 GA 528 Score = 154 bits (170), Expect = 6e-33 Identities = 255/366 (70%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 54443 CATGTGGGCTGTGAAGCTGCAACAGATGAAGGACGGACGCCTTTATATTGCGGGTATCGG 54502 |||||||||||| || | | |||| || ||||| | |||| | |||||||| || Sbjct 443 CATGTGGGCTGTCAAAATTGAGCAGACCAAAGACGGCAAACATTATGTCGCGGGTATTGG 384 Query 54503 TGCCGGTATTGAGAATACGCCAGCAGGAATGCAGAGTCAGGTGCTGCTGGCGGCAGACAG 54562 | | || ||| | ||| | ||| | | ||| ||| | ||| | || || | | Sbjct 383 CCTCAGCATGGAGGACACGGAGGAAGGCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCG 324 Query 54563 GATTGCGATGATTAATCCTGCGAATGGCAACACAAAGCCGATGTTTGTTGGTCAGGGCGA 54622 || || | ||| | || || || || || || |||||||||||| | |||||| | Sbjct 323 TATCGCATTTATTGACCCGGCAAACGGGAATGAAACGCCGATGTTTGTGGCGCAGGGCAA 264 Query 54623 TCAGATATTCATGAACGACGTGTTCCTGAAACGCCTGTTTGCGGTGAGTATCACGTCATC 54682 ||||||||||||||||||||||||||||| |||||| || | || || || | Sbjct 263 CCAGATATTCATGAACGACGTGTTCCTGAAGCGCCTGACGGCCCCCACCATTAC--CAGC 206 Query 54683 --CGGCAACCCCCCGACGTTTTCCCTGACGCCGGAAGGGAAGCTGACAGCCAGGAACGCG 54740 |||||| || ||| | ||||||||||| ||||| || |||||||| || | || ||| Sbjct 205 GGCGGCAATCCTCCGGCCTTTTCCCTGACACCGGACGGAAAGCTGACCGCTAAAAATGCG 146 Query 54741 GATATCAGCGGAGCAATTACCGCGAATACCGGCACGCTCAATAATGTCACCATTAACGAG 54800 |||||||| || | | ||||| |||| ||||||| |||||| || || || Sbjct 145 GATATCAGTGGCAGTGTGAATGCGAACTCCGGGACGCTCAGTAATGTGACGATAGCTGAA 86 Query 54801 AACTGT 54806 |||||| Sbjct 85 AACTGT 80 >seq13611 Length=919 Score = 190 bits (210), Expect = 8e-44 Identities = 205/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 30171 ATGAGCAGGGTAACCGTTATTATCTCCGCTCTGGTTATCTGCATTATCGCCTGCCTGTCA 30230 |||||||| || |||| |||||||||||||||||||||||||| |||| |||||||||| Sbjct 497 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 556 Query 30231 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAA--- 30287 |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 557 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 616 Query 30288 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGGCAACGTGAT 30329 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 617 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAT 676 Query 30330 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAATGC-GACTATCGA 30388 || || | || || || | |||||| |||||| | ||||||||||| || || || || Sbjct 677 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAAT-GA 735 Query 30389 AAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 30419 ||| |||| ||||||| | ||||| ||| Sbjct 736 TGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 89.7 bits (98), Expect = 2e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 12404 TCACAAAGAAAAAATCCCCGGCTGCCACCGAGGATTTTAAGCAAATTGATATGCAATTCT 12463 |||| || |||||| |||||| || |||||| || | | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 12464 GAGGGAATTACTGGATCAATCCACAGGAGTAATTATGACAAA 12505 |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198679187611710