Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq13611 1003 0.0 seq10087 587 2e-163 seq5240 104 6e-18 >seq13611 Length=919 Score = 1003 bits (1112), Expect = 0.0 Identities = 683/767 (89%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 39963 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 40022 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 40023 ATATGCTGGCGTGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 40082 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 40083 ATGACGTCATTGTTGGCGGAGAGCTATTCACTGATTACTCAGATCACCCACGCAAACTTG 40142 ||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 40143 TCACGCTAAACCCCAGACTCAAATCAACAGCAGCAGGACGTTACCAGCTTCTTTCCCGTT 40202 ||||||||||||| | |||||||||||||| || ||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 40203 GGTGGGATGCCTATCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCCAAAAGCCAGGACG 40262 ||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 40263 CTGTTGCGCTGCAGCAGATTAAGGAGCGTGGCGCTTTGCCGATGATTGATCGCGGTGATA 40322 |||| || |||||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 40323 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 40382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 40383 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCTGGCGGAACGG 40442 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 40443 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 40502 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 40503 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAGA 40562 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 40563 GCAGCGCGATAAA---GCCACA----TCCATC--------------ATCGCTGATATGCA 40601 |||||||| ||| |||| | | | | || |||| ||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 40602 GAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGC 40661 || |||||| |||||||| || | ||||| || | |||||| |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 40662 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 40707 ||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 587 bits (650), Expect = 2e-163 Identities = 378/419 (90%), Gaps = 1/419 (0%) Strand=Plus/Minus Query 33703 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 33762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 365 Query 33763 GGCTTATTCAGGTGCAGATCTGACCAAGCGACATTTTAAAGTGCTGCTTGCCATTCTGCG 33822 ||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 364 GGCTTATTCGGGCGCAGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCG 305 Query 33823 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 33882 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 245 Query 33883 TACAAAGTTACCCGTCAAACGGTGCAATGAGGCCAAGTTAGAACTCGTCAGAATGAATAT 33942 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 244 TACAAAGTTACCTGTCAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATAT 185 Query 33943 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGCGCATCCC 34002 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 184 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCC 125 Query 34003 TCAAAATGAGGGAATATCCCTCAAAACAGGGGATAAAACANNNCTCAATTTGAGGGAGTG 34062 |||||| ||||||| ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 124 TCAAAACGAGGGAAAATCCCCTAAAACGAGGGATAAAACATCCCTCAAATTGGGGGATTG 65 Query 34063 TNNNNNNNNNNNNNNNNNNGACACAAAAGACACTATT-CAAAAGAAAGAAATACAAGAT 34120 |||||||||||||||||| ||||||||| ||| | ||||| Sbjct 64 CTATCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAAAGAAAAAAAGAAAAGAT 6 Score = 96.9 bits (106), Expect = 1e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 33431 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATCCAGATGGATTTCTAAGGG 33490 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| Sbjct 566 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 507 Query 33491 CAT 33493 ||| Sbjct 506 CAT 504 >seq5240 Length=752 Score = 104 bits (114), Expect = 6e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 25008 CCAACCGTAAGCGCAATATCCTCGTTCTCCTGGTCGCGGAGTTTGATGTATTGCTGTTTT 25067 || || || |||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 25068 TTATCCAGCTCATCCAGCAG 25087 | ||| | ||||||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137481429827820