Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq13611 1007 0.0 seq10087 587 2e-163 >seq13611 Length=919 Score = 1007 bits (1116), Expect = 0.0 Identities = 684/767 (89%), Gaps = 23/767 (3%) Strand=Plus/Plus Query 37922 TGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAATCAATAATCAACGTAAGGCGTTCCTCG 37981 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1 TGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAATCAATAATCAACGTAAGGCGTTTCTCG 60 Query 37982 ATATGCTGGCGTGGTCAGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 38041 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACCAGAAATCATGGTT 120 Query 38042 ATGACGTCATTGTTGGCGGAGAGCTATTCACTGATTACTCAGATCACCCACGCAAACTTG 38101 ||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 121 ATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCACCCTCGCAAACTTG 180 Query 38102 TCACGCTAAACCCCAGACTCAAATCAACAGCAGCCGGACGTTACCAGCTTCTTTCCCGTT 38161 ||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||| Sbjct 181 TCACGCTAAACCCAAAACTCAAATCAACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTT 240 Query 38162 GGTGGGATGCCTATCGTAAGCAGCTTGGCCTGAAAGACTTCTCTCCCAAAAGCCAGGACG 38221 ||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 241 GGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTCTCTCCGAAAAGTCAGGACG 300 Query 38222 CTGTTGCGCTGCAGCAGATTAAGGAGCGTGGCGCTTTGCCGATGATTGATCGCGGTGATA 38281 |||| || |||||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 301 CTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCTATGATTGATCGTGGTGATA 360 Query 38282 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 38341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTTCACTGCCGGGCGCTGGTTATG 420 Query 38342 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCTGGCGGAACGG 38401 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 GTCAGTTCGAGCATAAGGCTGACAGCCTGATTGCAAAATTCAAAGAAGCGGGCGGAACGG 480 Query 38402 TCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCAT 38461 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCAT 540 Query 38462 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAGA 38521 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 541 CATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGC 600 Query 38522 GCAGCGCGATAAA---GCCACA----TCCATC--------------ATCGCTGATATGCA 38560 |||||||| ||| |||| | | | | || |||| ||||| Sbjct 601 CCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCA 660 Query 38561 GAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGC 38620 || |||||| |||||||| || | ||||| || | |||||| |||||| | |||||||| Sbjct 661 GATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGC 720 Query 38621 TAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38666 ||| || || || || ||| |||| ||||||| | ||||||||| Sbjct 721 TAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 766 >seq10087 Length=869 Score = 587 bits (650), Expect = 2e-163 Identities = 378/419 (90%), Gaps = 1/419 (0%) Strand=Plus/Minus Query 31662 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 31721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 365 Query 31722 GGCTTATTCAGGTGCAGATCTGACCAAGCGACATTTTAAAGTGCTGCTTGCCATTCTGCG 31781 ||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 364 GGCTTATTCGGGCGCAGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCG 305 Query 31782 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 31841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 245 Query 31842 TACAAAGTTACCCGTCAAACGGTGCAATGAGGCCAAGTTAGAACTCGTCAGAATGAATAT 31901 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 244 TACAAAGTTACCTGTCAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATAT 185 Query 31902 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGCGCATCCC 31961 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 184 TATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCC 125 Query 31962 TCAAAATGAGGGAATATCCCTCAAAACAGGGGATAAAACANNNCTCAATTTGAGGGAGTG 32021 |||||| ||||||| ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 124 TCAAAACGAGGGAAAATCCCCTAAAACGAGGGATAAAACATCCCTCAAATTGGGGGATTG 65 Query 32022 TNNNNNNNNNNNNNNNNNNGACACAAAAGACACTATT-CAAAAGAAAGAAATACAAGAT 32079 |||||||||||||||||| ||||||||| ||| | ||||| Sbjct 64 CTATCCCTCAAAACAGGGGGACACAAAAGACACTATTACAAAAGAAAAAAAGAAAAGAT 6 Score = 96.9 bits (106), Expect = 9e-16 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 31390 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATCCAGATGGATTTCTAAGGG 31449 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| Sbjct 566 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 507 Query 31450 CAT 31452 ||| Sbjct 506 CAT 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130952517401030