Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq594 199 5e-46 seq12641 127 3e-24 seq278 127 3e-24 seq516 123 3e-23 >seq594 Length=267672 Score = 199 bits (220), Expect = 5e-46 Identities = 683/1054 (65%), Gaps = 17/1054 (2%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 91752 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 91811 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | |||||| |||||| || || |||| ||||| || || ||||| || Sbjct 91812 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAACTTGCC 91871 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 91872 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 91931 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| | |||| ||| || || |||||||| | |||||| || | | | || Sbjct 91932 CTCCTTGAGGTCATTTGGAATGCCCCTAATATTTTGCACCGAGCCAT-TG--TAGGCAAT 91988 Query 115803 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 || | || ||| || | ||| ||||| ||| |||||||| ||| |||| Sbjct 91989 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 92048 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| || || ||| ||||||||| || || | || ||||| || | || | Sbjct 92049 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 92108 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 115978 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 92109 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 92167 Query 115979 CCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 116038 ||| || | || || | || | | || || | ||| | || ||||| | Sbjct 92168 CCAACAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 92227 Query 116039 CGTAGTTG-AGCTT--TGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | || | ||| | | | |||||||| ||||||||| || ||||| |||| Sbjct 92228 CCCAGCGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 92287 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 116155 | || || |||| | |||| || ||||| || ||||| | ||| |||||||| Sbjct 92288 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 92347 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 | | || ||| || || || |||||||| |||||| | | | ||||| | | Sbjct 92348 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCTGGC 92407 Query 116216 AATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 116275 | || | || || || ||||| |||||| | ||||| || || | |||| Sbjct 92408 ATGTGAATGGTAGCCGCATCAGGATAAAAGTATCCGCCATTCCTTGCACGCCAATTCCAA 92467 Query 116276 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTAT 116332 | || |||| | || ||| | || | ||| || |||||| || | || Sbjct 92468 TGGGACGATTGAGCTCGTT--GCTTCGGCGC-GACTCGGGTACAGGATAATGGTTACGAT 92524 Query 116333 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 116392 |||| || | ||| |||||||| ||||||| || |||| |||| ||| | || | Sbjct 92525 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGGTGGT 92584 Query 116393 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 116452 | || | | |||| | || ||| | ||||| || || || || || || |||| Sbjct 92585 CGTAAATTCTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 92644 Query 116453 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 116512 | | | ||||||| | || ||||||||||| || || || | || || | ||| | Sbjct 92645 CCGCGACCTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 92704 Query 116513 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATG 116572 || || | ||||| |||||||| || |||||| || |||||||| ||||| | | Sbjct 92705 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 92764 Query 116573 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 | ||||| ||| | || || | ||| || || Sbjct 92765 GGACGCCCGTTTCCATCTGCGATTCGAGTATGGC 92798 Score = 125 bits (138), Expect = 9e-24 Identities = 288/428 (67%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||| ||||| |||||||| || || | | ||||||| | | ||||| || | | Sbjct 87721 CGTAGGTAATACATACCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTC 87780 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | | | | |||||| |||||| || || |||| ||||| || || ||||| Sbjct 87781 AGTTGGCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAAC 87840 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || || ||| | ||||| || || | ||||||| | || ||||||||| | Sbjct 87841 TTGCCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGA 87900 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || | ||| | |||| ||| || || || ||||| | |||||| || | | Sbjct 87901 TACAGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACCGAGCCAT-TG--TAG 87957 Query 115798 ACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | |||| | || ||| || | ||| ||||| ||| |||||||| ||| Sbjct 87958 GCAATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACA 88017 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 |||| ||| || || ||| ||||||||| || || | || ||||| || | Sbjct 88018 AGGTACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAG 88077 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCAT 115973 || |||||||||||||||||||||| |||||| || || | ||||| || |||||||| Sbjct 88078 GTAAATGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCAT 88136 Query 115974 GGGTGCCA 115981 || |||| Sbjct 88137 TGGAGCCA 88144 >seq12641 Length=906 Score = 127 bits (140), Expect = 3e-24 Identities = 444/677 (66%), Gaps = 46/677 (7%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATAT--TCTCC 127288 ||| || |||||| |||||| |||||||||||||| || | || ||| || | ||| Sbjct 831 GTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAG--TGAAATCATTTCC 774 Query 127289 ATAAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGA 127343 ||||| || ||||||||||||||||| | | |||| |||| | Sbjct 773 ATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCGTTG-----CCAAGTGCCACCA 719 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 | || ||||||| || |||| |||||| |||||| || | |||||| || | | Sbjct 718 GCAGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCA 659 Query 127404 GGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | ||| |||| | ||| |||||||| | |||||||||||| || | | Sbjct 658 GCCGCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATA 600 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTG--CGTAA---AGTCTTG----AAGAGT 127513 || || ||||| ||| ||| ||| | || ||| || || || Sbjct 599 ATCTCGCGAATACGCTCCGTT---GGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGG 543 Query 127514 TCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 ||| ||||| || ||| | || || ||||| |||||||||||||| ||| | Sbjct 542 --CAC-GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTC 486 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 || || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||| Sbjct 485 AGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAG 426 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC-GGGACTTTGT 127692 || || || ||||| ||| || |||| || || || ||||| || | | || | Sbjct 425 AAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTGCGG 366 Query 127693 ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || |||| |||||||| | |||||||||| ||| || || | ||| || || Sbjct 365 AT----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGC 310 Query 127753 -TTCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGA 127809 | || | | | ||||||| || | |||| |||||||| |||| | || || Sbjct 309 GTGCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGA 253 Query 127810 ATATGTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCT 127867 |||||||| || || | ||| |||||| ||| || ||||||| ||||| | Sbjct 252 GTATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 195 Query 127868 TCGCTTATCTGTACCTC 127884 || || |||||| || Sbjct 194 TCCGGTACCTGTACTTC 178 >seq278 Length=37984 Score = 127 bits (140), Expect = 3e-24 Identities = 444/677 (66%), Gaps = 46/677 (7%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATAT--TCTCC 127288 ||| || |||||| |||||| |||||||||||||| || | || ||| || | ||| Sbjct 23585 GTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAG--TGAAATCATTTCC 23642 Query 127289 ATAAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGA 127343 ||||| || ||||||||||||||||| | | |||| |||| | Sbjct 23643 ATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCGTTG-----CCAAGTGCCACCA 23697 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 | || ||||||| || |||| |||||| |||||| || | |||||| || | | Sbjct 23698 GCAGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCA 23757 Query 127404 GGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | ||| |||| | ||| |||||||| | |||||||||||| || | | Sbjct 23758 GCCGCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATA 23816 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTG--CGTAA---AGTCTTG----AAGAGT 127513 || || ||||| ||| ||| ||| | || ||| || || || Sbjct 23817 ATCTCGCGAATACGCTCCGTT---GGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGG 23873 Query 127514 TCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 ||| ||||| || ||| | || || ||||| |||||||||||||| ||| | Sbjct 23874 --CAC-GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTC 23930 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 || || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||| Sbjct 23931 AGCCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAG 23990 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC-GGGACTTTGT 127692 || || || ||||| ||| || |||| || || || ||||| || | | || | Sbjct 23991 AAAATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTGCGG 24050 Query 127693 ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || |||| |||||||| | |||||||||| ||| || || | ||| || || Sbjct 24051 AT----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGC 24106 Query 127753 -TTCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGA 127809 | || | | | ||||||| || | |||| |||||||| |||| | || || Sbjct 24107 GTGCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGA 24163 Query 127810 ATATGTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCT 127867 |||||||| || || | ||| |||||| ||| || ||||||| ||||| | Sbjct 24164 GTATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACC 24221 Query 127868 TCGCTTATCTGTACCTC 127884 || || |||||| || Sbjct 24222 TCCGGTACCTGTACTTC 24238 >seq516 Length=139422 Score = 123 bits (136), Expect = 3e-23 Identities = 441/675 (65%), Gaps = 42/675 (6%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| |||||| |||||||||||||| || | || ||| | ||||| Sbjct 83992 GTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCAT 84051 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 ||| || ||||||||||||||||| | | |||| |||| || Sbjct 84052 AAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGTTCGTTG-----CCAAGTGCCACCAGC 84106 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 84107 AGCCGATCCGCCACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGC 84166 Query 127406 TT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 ||| |||| ||||| |||| ||| | |||||| ||||| || | | || Sbjct 84167 CGCACA-GGGATGGCGTCACAGATAAACTCACGCTCAATATCCACCGCACTGCAAATAAT 84225 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTG--CGTAA---AGTCTTG----AAGAGTTC 127515 || ||||| ||| ||| ||| | || ||| || || || Sbjct 84226 CTCGCGAATACGCTCCTTT---GGTAACTTGTTCACAATGTAGTTTTCGTACAACAGG-- 84280 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| ||||| || ||| | || || ||||| |||||||||||||| ||| ||| Sbjct 84281 CAC-GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAG 84339 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| Sbjct 84340 CCCGGGCATCAGACCACGCTTCTTTAGCCAGAAGAGCGCACAGAAGGAGCCGGAAAAGAA 84399 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC-GGGACTTTGTAT 127694 || || ||||| ||| || |||| || || |||||||| || | | || | || Sbjct 84400 AATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGAT 84459 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-T 127753 |||| |||||||| | |||||||||| ||| || || | ||| || || | Sbjct 84460 ----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGT 84515 Query 127754 TCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 127811 || | | | ||||||| || | |||| |||||||| |||| | | || | Sbjct 84516 GCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAACACCGAGT 84572 Query 127812 ATGTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTC 127869 ||||||| || || | ||| |||||| ||| || ||||||| ||||| | || Sbjct 84573 ATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTC 84630 Query 127870 GCTTATCTGTACCTC 127884 || |||||| || Sbjct 84631 CGGTACCTGTACTTC 84645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613281007564200