Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq516 158 2e-33 seq12641 156 7e-33 seq278 156 7e-33 >seq516 Length=139422 Score = 158 bits (174), Expect = 2e-33 Identities = 502/767 (65%), Gaps = 20/767 (3%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || ||||| ||||| |||| || || || |||||| || ||||| Sbjct 84002 ACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATAAAGTCGAAT 84061 Query 159704 GGGTTCTTCACGTGATAGCGC--TTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCA 159761 |||||||| || ||| | |||| || || ||| |||||| || || |||| Sbjct 84062 GGGTTCTTTGAGTTGTAGTGACGTTCGTTG--CCAAGTGCCACCAGCAGCCGATCCGCCA 84119 Query 159762 CAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 |||| |||||||| | ||||| || ||| ||||||||||||| || |||| | Sbjct 84120 CAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCCGCACAGGGATGG 84179 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT 159880 | || | | |||||| |||||| || ||||| | | ||||| |||| | ||| Sbjct 84180 CGTCACAGATAAACTCACGCTCAATATCCACCGCACTGCAAATAATCTCGCGA-ATACGC 84238 Query 159881 TCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 || | |||| || ||||| || | ||| |||||||||||||| |||| Sbjct 84239 TCCTTTGGTAACTTGTTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTCCGTGTGC 84298 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA---TGAGGCCCGGCATGATCCCA 159997 | || || || || ||||||| || || || ||| | || || ||||| | ||| Sbjct 84299 AAGCCTTCATCACGCGAGATGAGTTCATT--AC-TGAACGTCAGCCCGGGCATCAGACCA 84355 Query 159998 CGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGC 160056 ||| || ||||| || | | | || ||| | ||| ||| || || || ||||| || Sbjct 84356 CGCTTCTTTAGCCAGAAGA-GCGCACAGAAGGAGCCGGAAAAGAAAATACCTTCCACCGC 84414 Query 160057 CGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGC 160116 |||||| || || || | || |||| || | || || || |||||| | || Sbjct 84415 CGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTG---CGGATCCACCGAATCGC 84471 Query 160117 CCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 ||| | ||||| || ||||||||| || | | ||||| |||| | ||||| Sbjct 84472 CCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAACATGCGGTCCTT 84531 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||||| | ||| |||| ||| | | || | |||||| |||| | || || || Sbjct 84532 CTCCTCCGTATCTGTGATGTACGTATCCAACAACACCGAGTATGTTTCCGAATGAACGTT 84591 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 || ||||| ||||| || |||||| | | ||||| | ||| || ||| | Sbjct 84592 CTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACCTGTACTTCCGTCAT 84651 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 ||||| || |||| || | || | || || || |||||||| |||| ||| Sbjct 84652 GAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAAAGAACGCCAGCAC 84711 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 ||| ||| || |||| ||| ||| | |||| ||||||| Sbjct 84712 GTGCTTGATAAAGAACTTCTCCCCTTCGTTCA---TCTTCTCCCAGT 84755 >seq12641 Length=906 Score = 156 bits (172), Expect = 7e-33 Identities = 507/774 (66%), Gaps = 34/774 (4%) Strand=Plus/Minus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || ||||| ||||| |||| || || || |||||| || ||||| Sbjct 821 ACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAAATCATTTCCATAAAGTCGAAT 762 Query 159704 GGGTTCTTCACGTGATAG---CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCC 159760 |||||||| || ||| |||| || || || ||| |||||| || || ||| Sbjct 761 GGGTTCTTTGAGTTGTAGTGACGCT-CGTTG--CCAAGTGCCACCAGCAGCCGATCCGCC 705 Query 159761 ACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 ||||| |||||||| | ||||| || ||| ||||||||||||| || |||| Sbjct 704 ACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCCGCACAGGGATG 645 Query 159821 GCTTCCGACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGA---- 159873 | || ||||| ||||| |||||| || ||||| | | ||||| |||| Sbjct 644 GAGTC--ACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAATCTCGCGAATAC 587 Query 159874 GACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTC 159933 | |||| ||| ||||| || ||||| || | ||| |||||||||||||| Sbjct 586 GCTCCGTTGGTA-----GCTTGTTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTC 532 Query 159934 GCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA---TGAGGCCCGGCAT 159990 ||||| || || || || ||||||| || || || ||| | || || ||||| Sbjct 531 CGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATT--AC-TGAACGTCAGCCCGGGCAT 475 Query 159991 GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCT 160049 | |||||| || ||||| || | | | || ||| | ||| ||| || || || | Sbjct 474 CAGACCACGCTTCTTTAGCCAGAACA-GCGCACAGAAGGAGCCGGAAAAGAAAATACCTT 416 Query 160050 CCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACC 160109 |||| |||||||| || || || | || |||| || | || || || |||||| Sbjct 415 CCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTG---CGGATCCACC 359 Query 160110 TTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATC 160169 | ||||| | ||||| || ||||||||| || | | ||||| |||| | Sbjct 358 GAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAACATGC 299 Query 160170 TGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGT 160229 ||||| ||||| | ||| |||| ||| | | |||| |||||| |||| | | Sbjct 298 GGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGTTTCCGAAT 239 Query 160230 GCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCT 160289 | || || || ||||| ||||| || |||||| | | ||||| | ||| || | Sbjct 238 GAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACCTGTACTT 179 Query 160290 CCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAG 160349 || |||||| ||| |||| || | || | || || || |||||||| | Sbjct 178 CCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAAAGAACG 119 Query 160350 CCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 | | |||||| ||| || |||| ||| ||| | |||| ||||||| Sbjct 118 CTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCA---TCTTCTCCCAGT 68 >seq278 Length=37984 Score = 156 bits (172), Expect = 7e-33 Identities = 507/774 (66%), Gaps = 34/774 (4%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || ||||| ||||| |||| || || || |||||| || ||||| Sbjct 23595 ACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAAATCATTTCCATAAAGTCGAAT 23654 Query 159704 GGGTTCTTCACGTGATAG---CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCC 159760 |||||||| || ||| |||| || || || ||| |||||| || || ||| Sbjct 23655 GGGTTCTTTGAGTTGTAGTGACGCT-CGTTG--CCAAGTGCCACCAGCAGCCGATCCGCC 23711 Query 159761 ACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 ||||| |||||||| | ||||| || ||| ||||||||||||| || |||| Sbjct 23712 ACAAACTCGATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCCGCACAGGGATG 23771 Query 159821 GCTTCCGACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGA---- 159873 | || ||||| ||||| |||||| || ||||| | | ||||| |||| Sbjct 23772 GAGTC--ACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAATCTCGCGAATAC 23829 Query 159874 GACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTC 159933 | |||| ||| ||||| || ||||| || | ||| |||||||||||||| Sbjct 23830 GCTCCGTTGGTA-----GCTTGTTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTC 23884 Query 159934 GCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA---TGAGGCCCGGCAT 159990 ||||| || || || || ||||||| || || || ||| | || || ||||| Sbjct 23885 CGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATT--AC-TGAACGTCAGCCCGGGCAT 23941 Query 159991 GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCT 160049 | |||||| || ||||| || | | | || ||| | ||| ||| || || || | Sbjct 23942 CAGACCACGCTTCTTTAGCCAGAACA-GCGCACAGAAGGAGCCGGAAAAGAAAATACCTT 24000 Query 160050 CCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACC 160109 |||| |||||||| || || || | || |||| || | || || || |||||| Sbjct 24001 CCACCGCCGCAAAGGCAACAAGGCGTTCTGCAAACGAACTGCTGCTG---CGGATCCACC 24057 Query 160110 TTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATC 160169 | ||||| | ||||| || ||||||||| || | | ||||| |||| | Sbjct 24058 GAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAACATGC 24117 Query 160170 TGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGT 160229 ||||| ||||| | ||| |||| ||| | | |||| |||||| |||| | | Sbjct 24118 GGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGTTTCCGAAT 24177 Query 160230 GCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCT 160289 | || || || ||||| ||||| || |||||| | | ||||| | ||| || | Sbjct 24178 GAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACCTGTACTT 24237 Query 160290 CCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAG 160349 || |||||| ||| |||| || | || | || || || |||||||| | Sbjct 24238 CCGTCATGAACCGCTGAGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAAAGAACG 24297 Query 160350 CCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 | | |||||| ||| || |||| ||| ||| | |||| ||||||| Sbjct 24298 CTAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCA---TCTTCTCCCAGT 24348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794862036217200