Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq594 150 2e-31 >seq594 Length=267672 Score = 150 bits (166), Expect = 2e-31 Identities = 661/1026 (64%), Gaps = 39/1026 (4%) Strand=Plus/Minus Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||||||||| ||||| ||||||| || ||||| |||||| | || || |||||| Sbjct 92759 ATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAGTCATCAAG 92700 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | || ||||| || ||||| || | || | |||| | |||||| || ||||| Sbjct 92699 TGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAGGTCGCGGTGTGC 92640 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATT 112500 ||||| || || || || || || | ||||||| |||| |||| |||| || Sbjct 92639 AACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAGGAGA-GAAGA-ATTTACGACC 92582 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | | || | || || ||||||| |||||||||||| || || |||| || ||| Sbjct 92581 ACCAGCGGCTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGATCGATC 92522 Query 112561 GAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | || ||| || || ||| | || | || || | | ||||| |||| Sbjct 92521 GTAACCATTATCCTGTACCCGAGTC-GCGCCGAA--GCAACGAGCTCAATCGTCCCATTG 92465 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT-TTGTCGCCACGCATTTGATTCC 112676 | | || || ||||| | |||||| || || || || || || |||| | | Sbjct 92464 GAATTGGCGTGCAAGGAATGGCGGATACTTTTATCCTGATGCGGCTAC-CATTCACATGC 92406 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 | || |||| | | |||| ||| ||||| || || || ||| ||| | ||| Sbjct 92405 CAGGAGGCGAGGACTTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCTGTGGAG 92346 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 ||||| ||| | || || || || || || |||| |||| || ||| || Sbjct 92345 GCGAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAGGCAGTCCCGCG 92286 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAG-CTTCACTACGA 112852 || ||||| ||| || |||||| |||||| || || ||| ||| | || || Sbjct 92285 TCGCAAGGCCAGCTACAGTTTGATCTGTGGG-AGCAGAAACCGCGAAGTGGCCGCTGGGA 92227 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATG 112910 ||||| || | ||| | || || | | | | || | || | | || || || || Sbjct 92226 TTGGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGA--ATTCGTTACTGTTG 92169 Query 112911 GCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACC 112969 || |||||||| || || ||||| | || || |||||| || ||||| |||||||| || Sbjct 92168 GCTCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAGCC 92110 Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 113029 | || | || ||||| || | || || || |||||| | || ||||| Sbjct 92109 ATTTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAA 92050 Query 113030 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---AAGGATCT 113086 | | || ||| || |||| || ||||| ||| | | || ||| || | | Sbjct 92049 GTACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAATCAGAT 91990 Query 113087 CATGG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAG 113144 ||| | | || ||| || | ||||||||| || |||||| |||| | ||| Sbjct 91989 CATTGCCTACAA-----TGGCTCGGTGCAAAATATTAGGGGCATTCCAAATGACCTCAAG 91935 Query 113145 AAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGAT 113204 || |||| || || ||||| || | ||||||| |||| || ||||| | || Sbjct 91934 GAGCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTGTGGAC 91875 Query 113205 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATG 113264 ||||| |||||||| || |||||||| |||||||||| |||||| |||||| Sbjct 91874 CGTGGCAAGTTCATTGACCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAAC---T 91818 Query 113265 TCCA---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 113321 |||| |||| | || |||||| | | ||| | || || || ||||| ||| Sbjct 91817 TCCAGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGGGCATG 91758 Query 113322 TATTAC 113327 |||||| Sbjct 91757 TATTAC 91752 Score = 95.1 bits (104), Expect = 2e-14 Identities = 286/436 (66%), Gaps = 18/436 (4%) Strand=Plus/Minus Query 112906 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTT 112964 || |||| |||||||| || || ||||| | || || |||||| || ||||| |||||| Sbjct 88147 TGTTGGCTCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTT 88089 Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 || || | || | || ||||| || | || || || |||||| | || Sbjct 88088 GAGCCATTTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTT 88029 Query 113025 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 113084 |||||| | || ||| || |||| || ||||| ||| | | || ||| || Sbjct 88028 AACAAGTACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAAT 87969 Query 113085 C---TCATGG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAA 113139 | |||| | | || ||| || | ||||| ||| || |||||| |||| Sbjct 87968 CAGATCATTGCCTACAA-----TGGCTCGGTGCAAAACATTAGGGGCATTCCAAATGACC 87914 Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 113199 | ||| || |||| || || ||||| || | ||||||| |||| || ||||| | Sbjct 87913 TCAAGGAGCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTG 87854 Query 113200 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAA 113259 || ||||| |||||||| || |||||||| |||||||||| |||||| ||||| Sbjct 87853 TGGACCGTGGCAAGTTCATTGACCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAA 87794 Query 113260 CGATGTCCA---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGG 113316 | |||| | || | || |||||| | | ||| | || || || |||| Sbjct 87793 CT---TCCAGCCAACTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGG 87737 Query 113317 GGATGTATTACCTCCG 113332 | ||||||||||| || Sbjct 87736 GTATGTATTACCTACG 87721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620513540036400