Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq594 154 2e-32 seq607 84.2 3e-11 seq584 84.2 3e-11 seq563 84.2 3e-11 seq222 84.2 3e-11 seq516 82.4 9e-11 >seq594 Length=267672 Score = 154 bits (170), Expect = 2e-32 Identities = 1091/1740 (63%), Gaps = 56/1740 (3%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTT-- 109471 |||||||| ||||| || || ||| | ||| || | | ||||| || | || | Sbjct 91753 TAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTGG 91812 Query 109472 -TGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGA 109530 ||||| || ||| | |||| ||| | |||| ||| ||| || ||||| Sbjct 91813 CTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAACTTG 91869 Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590 ||||| || | ||||| ||||||| | ||| || | ||| ||||| ||| ||| Sbjct 91870 CCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATAC 91929 Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC--AGCCTTCA 109648 | | ||||| |||| |||||| || || ||||| | |||||| || | | Sbjct 91930 AGCTCCTTGAGGTCATTTGGAATGCCCCTAATATTTTGCACCGAGCCATTGTAGGCA--A 91987 Query 109649 CCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGAT 109708 || ||| |||||||| ||| ||||| ||| ||||||| ||||| | Sbjct 91988 TGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGT 92047 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 |||||| ||||| ||| |||||| || || || | |||||| || | || Sbjct 92048 ACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAA 92107 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 | || || || ||||||||||| || || || || | |||||| || |||||||| |||| Sbjct 92108 ATGGCTCAAAGCACTCATTGTTCCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 92167 Query 109829 CCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAAT 109888 ||| || | || || | || | || | | |||| || ||| ||||||| Sbjct 92168 CCAACAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 92227 Query 109889 CATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAG 109948 | | || ||||| || || | ||||||| ||| || || || | | Sbjct 92228 CCCAGCGGCCACTTCGCG--GTTTCTGC-TCCCACAGATCAAACTGTAGCTGGCCTTGCG 92284 Query 109949 CAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAG 110008 || ||| || || | | | || | |||||| || || || | || | Sbjct 92285 ACGCGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCG 92344 Query 110009 CCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTT 110068 |||| | || | | || || || |||||||||| |||||| | | ||| | Sbjct 92345 CCTCCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTCCT 92404 Query 110069 CACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGA 110127 || ||| || || || || || ||||| |||||| | || || || || | Sbjct 92405 GGCATGTGAATGGTAG-CCGCATCAGGATAAAAGTATCCGCCATTCCTTGCACGCCAATT 92463 Query 110128 CCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC---TACGGGGTAAAAGTTG 110184 |||||||| |||| | ||| || ||| | || ||| || ||| ||| Sbjct 92464 CCAATGGGACGATTGAGCTCGTT---GCTTCGGCGCGACTCGGGTACAGGATAATGGTTA 92520 Query 110185 CGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCG 110244 || ||||| || ||||| ||||| || || ||| | ||||||| |||| || | | Sbjct 92521 CGATCGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGG 92580 Query 110245 TAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTG 110304 | ||| | || | ||||||||| ||| | || || ||||| || ||||| ||| Sbjct 92581 TGGTCGTAAATTCTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTG 92640 Query 110305 CACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTC 110364 ||||| | ||| || | || || || | ||| || || || | ||| || | | Sbjct 92641 CACACCGCGACCTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCAC 92700 Query 110365 TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATG 110424 || ||||| || | ||||||||||| ||||| ||| ||||| ||||| || |||||| Sbjct 92701 TTGATGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATG 92760 Query 110425 TATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA--CATCGGCGGCGG 110482 | ||| || |||||| |||| || | ||| ||||| ||| | || | ||| Sbjct 92761 AAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATGGCAAACCACAGGGATTG--GGCCT 92818 Query 110483 GGACAGTTGCGTTAGCGAGACCTTCCTCC---TCGTACTTGGTGTACAAGTCCTCAAATT 110539 | || || || || | | |||| || ||| ||| || | | ||| | Sbjct 92819 GCACGGT---CTTGACGCCTCGATTCTCCCTTTCATACCCCTCGTATAACTTTTTAAAAT 92875 Query 110540 CCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT-CGGGACAGAAGAGGGACCAATTT 110598 | | || || ||| || || |||| | | |||| | | || | ||| || Sbjct 92876 CATCACCATAGCAGTCACTCAGTCCTGGCGCCGTATGCGGGTC-CATCAGCGTCCACTTG 92934 Query 110599 CCACC-CTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 || || ||| || || | || |||||| |||||||||||||| | || | || | || Sbjct 92935 CCTCCGCTCTTC-ACACGCTCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATC 92993 Query 110658 ACGGCAACGAGCCTCTTCATCACC------TTGGTTGAGGCGTAGCTCCAAAAAGTCCAT 110711 || | | ||||| | ||| || || | | || |||| | || Sbjct 92994 TCGCGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAGAAG-----AAAATTAAAT 93048 Query 110712 GATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGC 110768 ||||| ||||| || || | |||| || | || || ||||| | |||| | Sbjct 93049 -ATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGCTTGCCACCCCC 93107 Query 110769 CTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGA 110828 ||| | |||||||| || ||| ||| | || | ||||| || | || ||| | || Sbjct 93108 CTGATCTACATAGCGCGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGA 93167 Query 110829 TTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA---CGAATGTCGTGGATATGCAT 110885 || |||||||| || || || | | || | || || | ||| | || | Sbjct 93168 CTGGCCATTTGTCCCAGCAA---TGTAGCTCCCGGAACAGCGGATATTGTGCACGTGGAC 93224 Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 ||||| ||||| || | ||||| || || || | | | |||| ||||||| || Sbjct 93225 GCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCC 93284 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 ||||| || || |||||| ||||| |||||| ||| |||||| |||||| Sbjct 93285 CTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCGT 93344 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTA 111065 ||| |||||||| | ||| ||||| ||||| |||| || | ||||| | || || Sbjct 93345 TCCGGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTCCCCAAGAGACATATGGTCATA 93404 Query 111066 TGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 ||| || | || | ||||| |||||||||||||| || || |||| ||||| Sbjct 93405 TGTCTCCTTTACGCGCTCCATATCTTCACCGTGAATACCAAGAGCGACGCGCAAAAACAT 93464 Score = 116 bits (128), Expect = 4e-21 Identities = 285/429 (66%), Gaps = 10/429 (2%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || |||||||||||||| || || ||| | ||| || | | ||||| || | Sbjct 87721 CGTAGGTAATACATACCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTC 87780 Query 109468 AGTT---TGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 |||| ||||| || ||| | |||| ||| | |||| ||| ||| || ||| Sbjct 87781 AGTTGGCTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATG 87837 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 || ||||| || | ||||| ||||||| | ||| || | ||| ||||| ||| Sbjct 87838 AACTTGCCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACA 87897 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC--AG 109642 |||| | ||||| |||| |||||| || |||||||| | |||||| || Sbjct 87898 CGATACAGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACCGAGCCATTGTAG 87957 Query 109643 CCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAA 109702 | | || ||| |||||||| ||| ||||| ||| ||||||| | Sbjct 87958 GCA--ATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCA 88015 Query 109703 CAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 |||| | |||||| ||||| ||| |||||| || || || | |||||| || | Sbjct 88016 CAAGGTACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTG 88075 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 || | || || || ||||||||||| || || || || | |||||| || ||||||| Sbjct 88076 AGGTAAATGGCTCAAAGCACTCATTGTTCCCAAGTATCTGCGAAGTGGATGCAGTGGGCA 88135 Query 109823 TGGGAGCCA 109831 | ||||||| Sbjct 88136 TTGGAGCCA 88144 >seq607 Length=301879 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 223912 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 223853 Query 136772 CCGTTGGGAACAGCtttt 136789 | ||||||| || ||||| Sbjct 223852 CTGTTGGGAGCA-CTTTT 223836 >seq584 Length=253096 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 247023 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 246964 Query 136772 CCGTTGGGAACAGCtttt 136789 | ||||||| || ||||| Sbjct 246963 CTGTTGGGAGCA-CTTTT 246947 >seq563 Length=209991 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 181761 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 181702 Query 136772 CCGTTGGGAACAGCtttt 136789 | ||||||| || ||||| Sbjct 181701 CTGTTGGGAGCA-CTTTT 181685 >seq222 Length=24815 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 22757 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 22816 Query 136772 CCGTTGGGAACAGCtttt 136789 | ||||||| || ||||| Sbjct 22817 CTGTTGGGAGCA-CTTTT 22833 >seq516 Length=139422 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| || |||||||| ||||||||||| || || ||||| || || | ||| Sbjct 84302 CCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCGGGCATCAGACCACGCTTC 84361 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 |||||||| |||| ||||| || || |||||||| || || ||||| Sbjct 84362 TTTAGCCAGAAGAGCGCACAGAAGGAGCCGGAAAAGAAAATACCTTCCAC 84411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588758851911000