Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq594 178 2e-39 seq514 86.0 7e-12 seq325 86.0 7e-12 >seq594 Length=267672 Score = 178 bits (196), Expect = 2e-39 Identities = 695/1074 (65%), Gaps = 43/1074 (4%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCT-- 105653 || ||||| || ||||| || || ||| ||| || | | ||||| || | |||| Sbjct 91753 TAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTGG 91812 Query 105654 -TGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGA 105712 |||| |||||| |||||| || ||||||| |||||||||||||||||||| Sbjct 91813 CTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATGAACTTG 91869 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 ||||| | | ||||| || |||| ||||||| | || |||||||| || || Sbjct 91870 CCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATAC 91929 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACC 105832 || | ||||| |||| ||| || | |||||||| | || || | | | Sbjct 91930 AGCTCCTTGAGGTCATTTGGAATGCCCCTAATATTTTGCACCGA---GCCATTGTAGGCA 91986 Query 105833 ATGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 |||| ||| ||| || | | ||| ||||| ||| ||||||| | || || Sbjct 91987 ATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGG 92046 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 | |||||| || | |||||| || || || | || ||||| || | || Sbjct 92047 TACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTA 92106 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 | || |||||||| ||||| || |||||| || || | ||||| || || |||||||| Sbjct 92107 AATGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGG 92165 Query 106009 TGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 |||| || || || || || | || ||| | | || || | ||| | ||||| Sbjct 92166 AGCCAACAGTAACGA--ATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCC 92223 Query 106067 CAGTCGTAGTTG-AGCTT---GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 || || || | ||| |||||| | ||||||| |||||| || ||| ||||| Sbjct 92224 CAATCCCAGCGGCCACTTCGCGGTTTCTGC-TCCCACAGATCAAACTGTAGCTGGCCTTG 92282 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 |||| |||| || |||| | |||||| || | |||| || | ||| ||| Sbjct 92283 CGACGCGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCT 92342 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC-ATCTCCTTGGCT- 106240 |||||||| | ||| || || |||||||| ||| ||||| | |||| | || Sbjct 92343 CGCCTCCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTCCTCGCCTC 92402 Query 106241 ---TCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAAC 106296 ||| ||||| ||||| ||| || ||||| |||||| | ||||| || Sbjct 92403 CTGGCATGTGAAT------GGTAGCCGCATCAGGATAAAAGTATCCGCCATTCCTTGCAC 92456 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATA 106353 || | ||||| || | | || || ||| |||| | ||| || ||||| Sbjct 92457 GCCAATTCCAATGGGACGATTGAGCTCGTT--GCTTCGGCGC-GACTCGGGTACAGGATA 92513 Query 106354 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 106413 | || | || || ||||| || |||||||| || ||||| || |||| |||| || Sbjct 92514 ATGGTTACGATCGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAG 92573 Query 106414 TTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 106473 | | || || | | |||| | || ||| | |||||| || || || || Sbjct 92574 CCGCTGGTGGTCGTAAATTCTTCTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGC 92633 Query 106474 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTT 106533 | ||||| || || ||||||| | ||| ||||||| ||| ||||| || | ||| Sbjct 92634 AAGGTTGCACACCGCGACCTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTT 92693 Query 106534 GGAACTCTTAATCGTCCCCAA-ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 || | ||| || | | |||| |||||| || || || ||| || || ||||||| Sbjct 92694 CGAGCACTTGAT-GACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGT 92752 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 | |||||| | || ||||| ||| |||| || | ||| || || ||||| Sbjct 92753 AAAGCATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATGGCAAACCACA 92806 Score = 100 bits (110), Expect = 3e-16 Identities = 362/556 (65%), Gaps = 23/556 (4%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || || || ||||| || ||||| || || ||| ||| || | | ||||| || | Sbjct 87721 CGTAGGTAATACATACCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTC 87780 Query 105650 AGCT---TGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATG 105706 || | |||| |||||| |||||| || ||||||| |||||||||||||||||| Sbjct 87781 AGTTGGCTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGGTCAATG 87837 Query 105707 AAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTG 105766 || ||||| | | ||||| || |||| ||||||| | || |||||||| Sbjct 87838 AACTTGCCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACA 87897 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826 || || || | ||||| |||| ||| || | || ||||| | || || Sbjct 87898 CGATACAGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACCGA---GCCATTG 87954 Query 105827 TTGACCATGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTG 105883 | | | |||| ||| ||| || | | ||| ||||| ||| ||||||| | Sbjct 87955 TAGGCAATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATC 88014 Query 105884 ACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTC 105943 || || | |||||| || | |||||| || || || | || ||||| || Sbjct 88015 ACAAGGTACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTT 88074 Query 105944 GTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGG 106002 | || | || |||||||| ||||| || |||||| || || | ||||| || || || Sbjct 88075 GAGGTAAATGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGG 88133 Query 106003 CATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGA 106060 |||||| |||| || || || || || | || ||| | | || || | ||| | Sbjct 88134 CATTGGAGCCAACAGTAACGA--ATTCCGCATGCCACTTTTCATCATACGCTTCTTCAAT 88191 Query 106061 ACATCCCAGT-CGTAGTTGAGCTT---GGTTTCACCTTCCCACATATCAAATTGAAGCAC 106116 ||||||| | | | ||| |||||| | ||||||| |||||| || |||| Sbjct 88192 GCATCCCAATACCAACGGCCACTTCGCGGTTTCTGC-TCCCACAGATCAAAATGTAGCAG 88250 Query 106117 CCCTTGGGACGTGGGA 106132 ||||| |||| |||| Sbjct 88251 GCCTTGCGACGCGGGA 88266 >seq514 Length=138191 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 86954 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 87013 Query 136226 GGTAGGA 136232 ||||||| Sbjct 87014 GGTAGGA 87020 >seq325 Length=50015 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 2721 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 2780 Query 136226 GGTAGGA 136232 ||||||| Sbjct 2781 GGTAGGA 2787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589763281453800