Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_014900.1 Length=40986 Score E Sequences producing significant alignments: (Bits) Value seq5240 138 3e-28 seq13611 98.7 3e-16 >seq5240 Length=752 Score = 138 bits (152), Expect = 3e-28 Identities = 84/89 (94%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 5936 CCTACCGTAAGAGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 5995 ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 5996 CTTTCCCGTTCATCCAGTAGTGCCAGCAC 6024 ||||||||||||||||| ||| ||||||| Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCAC 664 >seq13611 Length=919 Score = 98.7 bits (108), Expect = 3e-16 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 22031 CAATAGCTGACATGCAGAAGCGTCAACGTGACGTAGCGAAGCTCGATGCCAGATACACAA 22090 |||| |||||||||||| |||||| ||||| || || ||||||||| | |||||| | Sbjct 645 CAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGA 704 Query 22091 AGGAGCTTGCTGATGCTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGT 22149 ||||| | ||||||||||| || || || || ||| |||| ||||||| | |||||| Sbjct 705 AGGAGTTAGCTGATGCTAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGT 763 Query 22150 CGT 22152 ||| Sbjct 764 CGT 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130987705072120