Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq385 96.9 4e-15 seq626 89.7 6e-13 >seq385 Length=67670 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAG 153266 || || ||||||||||||| | | || ||||| || || |||| || |||||| | ||| Sbjct 9823 ATTGGGCAAGGATACTATGAATCGATCACACCACCTGTAATACTTCGTAACGTTATAGAG 9882 Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 |||||| |||||||| | |||||||| || || ||||| |||||||| || | | Sbjct 9883 AATCCTGCATGGTACACCCCATACACTCCTTACCAGGCTGAAATATCTCAAGGCCGTCTA 9942 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAA--TAGCAA 153384 || | | || |||| || | | || | ||| | |||| || || | |||| Sbjct 9943 GAGTCCCTGTTGAATTTTCAGTCCATGATTATAGACTTGACAG--CTATGAATTTGGCAA 10000 Query 153385 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | |||||||| | ||| |||| |||||| || || |||||| Sbjct 10001 ATGCATCTCTTCTGGATCAAGCTACTGCATGTGCTGAGGCAATG 10044 >seq626 Length=462296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAG 153266 || || ||||||||||||| | | || ||||| || || |||| || |||||| | ||| Sbjct 443646 ATTGGGCAAGGATACTATGAATCGATCACACCACCTGTAATACTTCGTAACGTTATCGAG 443705 Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 |||||| |||||||| | |||||||| | || ||||| |||||||| || | | Sbjct 443706 AATCCTGCATGGTACACCCCATACACTCCTTTCCAGGCTGAAATATCTCAAGGCCGTCTA 443765 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAAC 153386 || | | || |||| || | | || | ||| | |||| | | ||||| Sbjct 443766 GAGTCCCTGTTGAATTTTCAGTCCATGATTATAGACTTGACAGCTATGGATTTGGCAAAT 443825 Query 153387 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 |||||||| | ||| |||| |||||| || || |||||| Sbjct 443826 GCATCTCTTCTTGATCAAGCTACTGCATGTGCTGAGGCAATG 443867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578999251480800