Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq626 102 1e-16 seq385 102 1e-16 seq29495 86.0 7e-12 >seq626 Length=462296 Score = 102 bits (112), Expect = 1e-16 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||||||||||| | | |||||||| || || |||| || |||||| | ||| Sbjct 443646 ATTGGGCAAGGATACTATGAATCGATCACACCACCTGTAATACTTCGTAACGTTATCGAG 443705 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| |||||||| | |||||||| | || ||||| |||||||| || | | Sbjct 443706 AATCCTGCATGGTACACCCCATACACTCCTTTCCAGGCTGAAATATCTCAAGGCCGTCTA 443765 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA--TAGCAA 158059 || | | || |||| || | | || | ||| | |||| ||| || | |||| Sbjct 443766 GAGTCCCTGTTGAATTTTCAGTCCATGATTATAGACTTGACAG--CTATGGATTTGGCAA 443823 Query 158060 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | |||||||| | ||| |||| |||||| || || |||||| Sbjct 443824 ATGCATCTCTTCTTGATCAAGCTACTGCATGTGCTGAGGCAATG 443867 >seq385 Length=67670 Score = 102 bits (112), Expect = 1e-16 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||||||||||| | | |||||||| || || |||| || |||||| | ||| Sbjct 9823 ATTGGGCAAGGATACTATGAATCGATCACACCACCTGTAATACTTCGTAACGTTATAGAG 9882 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| |||||||| | |||||||| || || ||||| |||||||| || | | Sbjct 9883 AATCCTGCATGGTACACCCCATACACTCCTTACCAGGCTGAAATATCTCAAGGCCGTCTA 9942 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA--TAGCAA 158059 || | | || |||| || | | || | ||| | |||| ||| | | |||| Sbjct 9943 GAGTCCCTGTTGAATTTTCAGTCCATGATTATAGACTTGACAG--CTATGAATTTGGCAA 10000 Query 158060 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | |||||||| | ||| |||| |||||| || || |||||| Sbjct 10001 ATGCATCTCTTCTGGATCAAGCTACTGCATGTGCTGAGGCAATG 10044 >seq29495 Length=103433 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/226 (69%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCA--TCACACCCCCAGTCATACAGCGAAACGTTCTTG 157939 || || |||||||||||| || ||| |||||| || || |||| || |||||| | | Sbjct 9605 ATTGGGCAAGGATACTAT-GAGCCAGGGCACACCACCTGTAATACTTCGTAACGTTGTCG 9547 Query 157940 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 157999 |||||||| ||| |||| | |||||||| | || ||||| |||||||| || | Sbjct 9546 AGAATCCTGCATGGCACACCCCATACACTCCTTTCCAGGCTGAAATATCTCAAGGCCGTC 9487 Query 158000 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA--TAGC 158057 | || | | || |||| || | | || | |||| | |||| ||| || | || Sbjct 9486 TAGAGTCCCTGTTGAATTTTCAGTCCATGATTATAGAATTGACAG--CTATGGATTTGGC 9429 Query 158058 AAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||| |||||||| | ||| ||| |||||| || || |||||| Sbjct 9428 AAATGCATCTCTTCTTGATCAAGTTACTGCATGTGCTGAGGCAATG 9383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587834392873200